Browse Element(s) Details


Os.51225.1.S1_at

Description gb:AK062269.1
DB_XREF= gi:32972287
TID=Os.51225.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A05, full insert sequence.
FL= gb:AK062269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0381011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03790NANA4+1677240..1683394retrotransposon protein, putative, unclassified
LOC_Os04g03796Os.49328.1.S1_at11/114+1689101..1690041Subtilisin serine protease, putative, expressed
LOC_Os04g03802Os.7278.2.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_x_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03802Os.7278.1.S1_at11/114+1692519..1697608PA domain containing protein, expressed
LOC_Os04g03810Os.51225.1.S1_at11/114+1701788..1707406Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03820OsAffx.25855.1.S1_at10/114+1708170..1708795hypothetical protein
LOC_Os04g03830Os.54228.1.S1_at11/114+1710306..1714386Calcium binding EGF domain containing protein, expressed
LOC_Os04g03840Os.12100.1.S1_at1/114+1721070..1721566retrotransposon protein, putative, unclassified
LOC_Os04g03850OsAffx.13648.1.S1_at11/114+1723719..1728137subtilase family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51225.1.S1_at--704--3171Chr04:1706851..1706875 (25 bp)
AATTGTGAATCTGCCAACTCAAGCT
LOC_Os04g03810
Os.51225.1.S1_at--78--9151Chr04:1706913..1706937 (25 bp)
TGCGATCCCGAATCTGACAATGCCA
LOC_Os04g03810
Os.51225.1.S1_at--112--5611Chr04:1706928..1706952 (25 bp)
GACAATGCCAACAACGGTGCTGAGA
LOC_Os04g03810
Os.51225.1.S1_at--807--10171Chr04:1706986..1707010 (25 bp)
TATAAGGCTGTTGTCCAATGCCCTC
LOC_Os04g03810
Os.51225.1.S1_at--548--9131Chr04:1707017..1707041 (25 bp)
TGCGGATATCGGTGGAGCCATCTGT
LOC_Os04g03810
Os.51225.1.S1_at--62--8191Chr04:1707112..1707136 (25 bp)
GGAAGCTACCTGTTTGGAAGCCTAG
LOC_Os04g03810
Os.51225.1.S1_at--36--6251Chr04:1707145..1707169 (25 bp)
GATGGTGCCGCTCACTATGTCAGGA
LOC_Os04g03810
Os.51225.1.S1_at--878--71Chr04:1707175..1707199 (25 bp)
ATTGCCGTTCGACCAGTTATATCTG
LOC_Os04g03810
Os.51225.1.S1_at--617--8491Chr04:1707266..1707290 (25 bp)
TGGCTTATCCTATTTTAGACCCCTC
LOC_Os04g03810
Os.51225.1.S1_at--510--1251Chr04:1707282..1707306 (25 bp)
AGACCCCTCCTCATAGTTGAATTTG
LOC_Os04g03810
Os.51225.1.S1_at--820--3111Chr04:1707301..1707325 (25 bp)
AATTTGTCGGCCTTGCTGAAACTGC
LOC_Os04g03810
Target Sequence 
AATTGTGAATCTGCCAACTCAAGCTGTGAATCTATATTTCAAAATCTGAACCTTCCATCAATTGCGATCCCGAATCTGAC
AATGCCAACAACGGTGCTGAGAACAGTGACAAATGTAGGCCAAGATGATGCCATTTATAAGGCTGTTGTCCAATGCCCTC
CTGGTGTGCGGATATCGGTGGAGCCATCTGTTTTACAATTCAAGCAAGGAAAGAAGAAGCAGAGCTTCAAGGTCACCTTT
AGCATGACACACAAGGTTCAGGGAAGCTACCTGTTTGGAAGCCTAGCATGGTGTGATGGTGCCGCTCACTATGTCAGGAT
CCCAATTGCCGTTCGACCAGTTATATCTGAGAATTATGCAGATCTCTGATGAAGCATAGGACTACAAGATTTTCAGAGAT
TCGATCAGCTGAGAATGGCTTATCCTATTTTAGACCCCTCCTCATAGTTGAATTTGTCGGCCTTGCTGAAACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis