Browse Element(s) Details


Os.51231.1.S1_at

Description gb:AK062293.1
DB_XREF= gi:32972311
TID=Os.51231.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F01, full insert sequence.
FL= gb:AK062293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4391011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43890OsAffx.15095.1.S1_at11/115+25443704..25444056hypothetical protein
LOC_Os05g43900NANA5+25455034..25455941hypothetical protein
LOC_Os05g43910Os.51231.1.S1_at11/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_x_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910Os.54620.1.A1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43920Os.50772.1.S1_at8/115+25472959..25478376Auxin response factor family protein, expressed
LOC_Os05g43930Os.13003.1.S1_at11/115+25481311..25483018O-methyltransferase ZRP4, putative, expressed
LOC_Os05g43940Os.48215.1.A1_at4/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43940Os.13003.1.S1_at2/115+25486052..25487650O-methyltransferase ZRP4, putative

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51231.1.S1_at--638--1171Chr05:25462617..25462641 (25 bp)
AGTACAGTTCGCAACTTTGCTCCAT
LOC_Os05g43910
Os.51231.1.S1_at--595--4791Chr05:25462635..25462659 (25 bp)
GCTCCATTTCCAGTTTTTCCATGTG
LOC_Os05g43910
Os.51231.1.S1_at--471--1671Chr05:25462698..25462722 (25 bp)
AGCCTGTAACTTCCTACTGAACCGG
LOC_Os05g43910
Os.51231.1.S1_at--153--5731Chr05:25462788..25462812 (25 bp)
GACTGTTCACTTTGGCAGGATTTTG
LOC_Os05g43910
Os.51231.1.S1_at--1144--1051Chr05:25462920..25462944 (25 bp)
AGGGTCCAGAGGCACCTGACATGAA
LOC_Os05g43910
Os.51231.1.S1_at--917--3511Chr05:25462939..25462963 (25 bp)
CATGAAGCTGTTGCCGTATGACGAG
LOC_Os05g43910
Os.51231.1.S1_at--733--6431Chr05:25462972..25462996 (25 bp)
GATCATCACAGTACAACGCACAGGC
LOC_Os05g43910
Os.51231.1.S1_at--934--2432Chr05:25463014..25463038 (25 bp)
AAAATCGTGGCAGGGCGAGCGAACA
LOC_Os05g43910
Os.51231.1.S1_at--1101--3471Chr05:25463037..25463061 (25 bp)
CAGGAGACCTGTGGTACACTGGTAC
LOC_Os05g43910
Os.51231.1.S1_at--901--10791Chr05:25463084..25463108 (25 bp)
TTGTACACTGGTACTCCGTACTGGA
LOC_Os05g43910
Os.51231.1.S1_at--878--10131Chr05:25463116..25463140 (25 bp)
TATGCATGCACTTATACACGCCCAG
LOC_Os05g43910
Target Sequence 
AGTACAGTTCGCAACTTTGCTCCATTTCCAGTTTTTCCATGTGGGTTGAATTAGTGGGCCTGAACATGGAAGAATCAGGC
CAGCCTGTAACTTCCTACTGAACCGGCCCACCAAGCTGCAACCATATCAAAGCACCGAAAACAGGCCAAATAATGGCCAG
AGAGATGAAGGGACTGTTCACTTTGGCAGGATTTTGCTAACTTATCAAAATTTTGGCATGATTTTTTATACATAGTTACT
AAAATTTGATAGCAAACTAAATATAGCTTTTTTTTTAACTTTACTAATAACATTAAAGTGAACAGGGTCCAGAGGCACCT
GACATGAAGCTGTTGCCGTATGACGAGGTGAACTTGATCATCACAGTACAACGCACAGGCACAGCATACGCCGCCAAAAA
ATCGTGGCAGGGCGAGCGAACAGGAGACCTGTGGTACACTGGTACTACGTACCATTTTTTTTTTAACATTGTACACTGGT
ACTCCGTACTGGAGTACTAGTATGCATGCACTTATACACGCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis