Browse Element(s) Details


Os.50772.1.S1_at

Description gb:AK067927.1
DB_XREF= gi:32977945
TID=Os.50772.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127F13, full insert sequence.
FL= gb:AK067927.1 gb:AK058446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g439208/11Auxin response factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43900NANA5+25455034..25455941hypothetical protein
LOC_Os05g43910Os.51231.1.S1_at11/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_x_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910Os.54620.1.A1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43910OsAffx.24230.1.S1_at1/115+25460016..25463202Cytochrome P450 family protein, expressed
LOC_Os05g43920Os.50772.1.S1_at8/115+25472959..25478376Auxin response factor family protein, expressed
LOC_Os05g43930Os.13003.1.S1_at11/115+25481311..25483018O-methyltransferase ZRP4, putative, expressed
LOC_Os05g43940Os.48215.1.A1_at4/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43940Os.13003.1.S1_at2/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43950Os.27201.1.S1_at11/115+25492433..25496551expressed protein
LOC_Os05g43950Os.18072.1.S1_x_at1/115+25492433..25496551expressed protein
LOC_Os05g43960OsAffx.15096.1.S1_at11/115+25496926..25498559No apical meristem protein, expressed
LOC_Os05g43970Os.53554.1.S1_at11/115+25498862..25503369expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009850biological_processauxin metabolism
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010158biological_processabaxial cell fate specification
GO:0010227biological_processfloral organ abscission
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50772.1.S1_at--875--1511Chr05:25477985..25478009 (25 bp)
AGCAGCTGCAGACTGTTTGGCTTCT
LOC_Os05g43920
Os.50772.1.S1_at--617--5391Chr05:25478066..25478090 (25 bp)
GAAGCTGGTTGCGAAAACCCGCCCG
LOC_Os05g43920
Os.50772.1.S1_at--643--4791Chr05:25478153..25478177 (25 bp)
GCTCCCCTGGGAATGTGATGCTGCT
LOC_Os05g43920
Os.50772.1.S1_at--698--8591Chr05:25478206..25478230 (25 bp)
TGGTCGTTGCATCAAGCTACCTAGC
LOC_Os05g43920
Os.50772.1.S1_at--187--9991Chr05:25478253..25478277 (25 bp)
TAGCTACTTCCTAGATTTCTTCGGC
LOC_Os05g43920
Os.50772.1.S1_at--746--6531Chr05:25478266..25478290 (25 bp)
GATTTCTTCGGCACATTCTTGTAAG
LOC_Os05g43920
Os.50772.1.S1_at--66--10751Chr05:25478293..25478317 (25 bp)
TTGCAGCGGCGCCATTTGTATGTTG
LOC_Os05g43920
Os.50772.1.S1_at--637--7031Chr05:25478342..25478366 (25 bp)
GTAACTGTACCTTGAAATTTCGGCT
LOC_Os05g43920
Os.50772.1.S1_at--722--3111Chr05:25478357..25478381 (25 bp)
AATTTCGGCTGTTTGTCCGTAGCTT
NONE
Os.50772.1.S1_at--232--6371Chr05:25478407..25478431 (25 bp)
GATCCTCGAACTTAACTACACGTAG
NONE
Os.50772.1.S1_at--754--1052Chr05:25478523..25478547 (25 bp)
AGGGTGTTACTTTTCAGCTACTTCA
NONE
Target Sequence 
AGCAGCTGCAGACTGTTTGGCTTCTCCCTGACAGGCAACATGCTGGGAGAAGATGGAGAAGGCCTAGATGATGGAGCCAT
TGAAGCTGGTTGCGAAAACCCGCCCGTGCTGGAGCTGTTTGGGCACAGCCATTCTACTCCCGGTGCTCTTCATGCCCTGT
GTGCTGCTGCTCCCCTGGGAATGTGATGCTGCTGCAGTACTGATGGTTTGCTCTGGGGAAATGGTCGTTGCATCAAGCTA
CCTAGCTGAAACNAACTGAATAATGTGTTAGCTACTTCCTAGATTTCTTCGGCACATTCTTGTAAGGATTGCAGCGGCGC
CATTTGTATGTTGGTGCCACATGATGCATGTAAGACTGTAACTGTACCTTGAAATTTCGGCTGTTTGTCCGTAGCTTATG
ACATGAAGACTATGCAGAAGCAGATCCTCGAACTTAACTACACGTAGCATGCTGTATGACTATACGAGTCAACTGCACGT
GCAGTTAAGTTGGAGTATCCTGATGGTGTTGTTTTGACAGTTGTGAAGCTAGGCCGCTAGGGTGTTACTTTTCAGCTACT
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis