Browse Element(s) Details


Os.51264.1.S1_at

Description gb:AK062371.1
DB_XREF= gi:32972389
TID=Os.51264.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51264 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A07, full insert sequence.
FL= gb:AK062371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2622011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26190Os.46012.3.S1_x_at6/1112+15264137..15269840retrotransposon protein, putative, unclassified
LOC_Os12g26190Os.46012.2.S1_x_at6/1112+15264137..15269840retrotransposon protein, putative, unclassified
LOC_Os12g26190Os.27088.1.A1_x_at3/1112+15264137..15269840retrotransposon protein, putative, unclassified
LOC_Os12g26190Os.54691.1.S1_x_at1/1112+15264137..15269840retrotransposon protein, putative, unclassified
LOC_Os12g26204Os.35344.18.S1_x_at6/1112+15272195..15279050transposon protein, putative, Mutator sub-class
LOC_Os12g26204OsAffx.22940.5.S1_x_at6/1112+15272195..15279050transposon protein, putative, Mutator sub-class
LOC_Os12g26204Os.35344.3.S1_x_at5/1112+15272195..15279050transposon protein, putative, Mutator sub-class
LOC_Os12g26204OsAffx.22940.5.S1_at2/1112+15272195..15279050transposon protein, putative, Mutator sub-class
LOC_Os12g26204OsAffx.22940.1.S1_s_at2/1112+15272195..15279050transposon protein, putative, Mutator sub-class
LOC_Os12g26204OsAffx.22940.2.S1_s_at2/1112+15272195..15279050transposon protein, putative, Mutator sub-class
LOC_Os12g26204OsAffx.31552.2.S1_at1/1112+15272195..15279050transposon protein, putative, Mutator sub-class
LOC_Os12g26220Os.51264.1.S1_at11/1112+15281673..15282235expressed protein
LOC_Os12g26220Os.51264.1.S1_x_at11/1112+15281673..15282235expressed protein
LOC_Os12g26229NANA12+15284383..15284621NA
LOC_Os12g26240NANA12+15289571..15295725retrotransposon protein, putative, unclassified
LOC_Os12g26250Os.31312.5.S1_x_at4/1112+15296356..15299573retrotransposon protein, putative, unclassified
LOC_Os12g26250Os.31312.2.S1_x_at2/1112+15296356..15299573retrotransposon protein, putative, unclassified
LOC_Os12g26260NANA12+15302262..15305271retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51264.1.S1_at--977--1031Chr12:15282110..15282134 (25 bp)
AGGTGCAGGCCAGCGGTGGCATGCA
LOC_Os12g26220
Os.51264.1.S1_at--672--3431Chr12:15281953..15281977 (25 bp)
CAGATCCAGGGAGGTGCGGCCTAGT
LOC_Os12g26220
Os.51264.1.S1_at--82--9471Chr12:15281833..15281857 (25 bp)
TCTGGCGGCCCGGTGGCAATGTTCT
LOC_Os12g26220
Os.51264.1.S1_at--731--8411Chr12:15281827..15281851 (25 bp)
GGCCCGGTGGCAATGTTCTGTGAAT
LOC_Os12g26220
Os.51264.1.S1_at--171--8231Chr12:15281819..15281843 (25 bp)
GGCAATGTTCTGTGAATGATTTCTT
LOC_Os12g26220
Os.51264.1.S1_at--632--6532Chr12:15281802..15281826 (25 bp)
GATTTCTTTGATCAATGTTTATGTG
LOC_Os12g26220
Os.51264.1.S1_at--337--6531Chr12:15281765..15281789 (25 bp)
GATTTCTCATTGAATGATTTCTGTG
LOC_Os12g26220
Os.51264.1.S1_at--666--3892Chr12:15281745..15281769 (25 bp)
CTGTGATTTCTCTGTGAATGACTTC
LOC_Os12g26220
Os.51264.1.S1_at--339--6532Chr12:15281741..15281765 (25 bp)
GATTTCTCTGTGAATGACTTCTGTG
LOC_Os12g26220
Os.51264.1.S1_at--1073--3772Chr12:15281736..15281760 (25 bp)
CTCTGTGAATGACTTCTGTGAAATA
LOC_Os12g26220
Os.51264.1.S1_at--370--49710Chr12:15640858..15640895 (25 bp)
GCATCGGCTCGATTTGAGCCTTTTT
NONE
Target Sequence 
AGGTGCAGGCCAGCGGTGGCATGCAGCGGCGGTGGGGAGGGGGGATGCGGTGGTGGCTTGGCGGTGGCGCCCTCCCCTCT
CGACTCTCTCTCACTGCCCTCGGCCGGCGGCTGGCCGGTGGAGGCGGTAGCAGCGGCGGACCCCCCCCCCTCTCTGCCAG
ATCCAGGGAGGTGCGGCCTAGTGGCGGGAGGCGGCATGCTGCGGCGGAAGGGAGGGGGTTGTGGTGGCGGGACGAGAGGC
GGTGGTGGCCTGGCAGCGGCGCCCTCCCTCCGTCGGATCTGGCGGCCCGGTGGCAATGTTCTGTGAATGATTTCTTTGAT
CAATGTTTATGTGAATGATTTTTGTGATTTCTCATTGAATGATTTCTGTGATTTCTCTGTGAATGACTTCTGTGAAATAT
TTCTGTGAATGATTGGGGATTGGGGATGAGCTCGATGCATCGGCTCGATTTGAGCCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51264.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis