Browse Element(s) Details


Os.51294.1.S1_at

Description gb:AK062448.1
DB_XREF= gi:32972466
TID=Os.51294.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-B11, full insert sequence.
FL= gb:AK062448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g345103/11retrotransposon protein, putative, unclassified
LOC_Os05g405001/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34450Os.26886.3.S1_x_at6/117+20654923..20658140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34450Os.26886.1.S1_x_at5/117+20654923..20658140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34460Os.53142.1.S1_at2/117+20659951..20661588transposon protein, putative, unclassified
LOC_Os07g34470NANA7+20663345..20663938transposon protein, putative, unclassified
LOC_Os07g34480Os.53142.1.S1_at2/117+20666198..20669010retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g34490NANA7+20670562..20671387retrotransposon protein, putative, unclassified
LOC_Os07g34500Os.26886.2.S1_s_at11/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34500Os.26886.6.S1_s_at10/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34500OsAffx.16467.1.S1_at9/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34500OsAffx.3425.1.S1_at1/117+20672758..20675852transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g34510Os.51294.1.S1_at3/117+20679460..20689273retrotransposon protein, putative, unclassified
LOC_Os07g34520Os.22277.1.S1_at11/117+20689392..20691827Isocitrate lyase, putative, expressed
LOC_Os07g34530NANA7+20702398..20702604hypothetical protein
LOC_Os07g34540OsAffx.28748.1.S1_at10/117+20705661..20707120hypothetical protein
LOC_Os07g34550NANA7+20711674..20715734transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51294.1.S1_at--706--1191Chr11:14187701..14187725 (25 bp)
AGTAGTCGCCGTGGAATCCCATCAA
NONE
Os.51294.1.S1_at--120--2611Chr11:14187727..14187751 (25 bp)
AACCACGGGCATCATACGCTTGGAA
NONE
Os.51294.1.S1_at--967--4111Chr11:14187743..14187767 (25 bp)
CGCTTGGAAGGAGTTGTTCGTCGCT
NONE
Os.51294.1.S1_at--132--4072Chr11:14187813..14187837 (25 bp)
CGAGGCGAACAAGTATCCAGGCTGC
NONE
Os.51294.1.S1_at--138--1631Chr11:14187855..14187879 (25 bp)
AGCGGCGATGCCACTGCTGGCCATG
NONE
Os.51294.1.S1_at--227--1991Chr11:14187867..14187891 (25 bp)
ACTGCTGGCCATGCAGAGACAGCGG
NONE
Os.51294.1.S1_at--663--8272Chr11:14187964..14187988 (25 bp)
GGCTTGGTTTCTCCAGTAAGAGATT
NONE
Os.51294.1.S1_at--304--6051Chr11:14187983..14188007 (25 bp)
GAGATTTCTGCTGATCGATTTGGAT
NONE
Os.51294.1.S1_at--743--10852Chr11:14188002..14188026 (25 bp)
TTGGATGAGATGTGCTTACCTCACA
NONE
Os.51294.1.S1_at--311--8692Chr11:14188012..14188036 (25 bp)
TGTGCTTACCTCACATCGAGGTGTC
NONE
Os.51294.1.S1_at--258--6471Chr11:14188062..14188086 (25 bp)
GATAAACAGATACCACACATATTTT
NONE
Target Sequence 
AGTAGTCGCCGTGGAATCCCATCAACAACCACGGGCATCATACGCTTGGAAGGAGTTGTTCGTCGCTGGGTGGGCGGATG
CTGTTCGTCACGCGAGGCTGCTCCAGATCGTACGAGGCGAACAAGTATCCAGGCTGCCGCCGCCGAAGCCGAGGAGCGGC
GATGCCACTGCTGGCCATGCAGAGACAGCGGCAAGTGGCTGGCGGCTGCCGGGGACGTGGACAAGTTCTTGCCGGAGCAA
GGCCCGTTGAAATACTCACCGCCGGCTTGGTTTCTCCAGTAAGAGATTTCTGCTGATCGATTTGGATGAGATGTGCTTAC
CTCACATCGAGGTGTCCCCCCAGTTTTTTTTTTTCATGAATGATAAACAGATACCACACATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis