Browse Element(s) Details


Os.51332.1.S1_at

Description gb:AK066496.1
DB_XREF= gi:32976514
TID=Os.51332.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074B07, full insert sequence.
FL= gb:AK066496.1 gb:AK062558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3053010/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30450OsAffx.12289.1.S1_at11/112+18131447..18132199Harpin-induced protein 1 containing protein
LOC_Os02g30460NANA2+18133196..18136793expressed protein
LOC_Os02g30470NANA2+18139886..18140095expressed protein
LOC_Os02g30480NANA2+18141334..18144991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30490NANA2+18145836..18146654hypothetical protein
LOC_Os02g30500NANA2+18147890..18149103hypothetical protein
LOC_Os02g30510OsAffx.8166.1.S1_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30510OsAffx.20387.1.S1_x_at1/112+18149989..18152922retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30520NANA2+18153175..18156347retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30530Os.51332.1.S1_at10/112+18157101..18160997transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g30540OsAffx.24512.1.S1_at11/112+18167489..18172501Leucine Rich Repeat family protein
LOC_Os02g30550OsAffx.12292.1.S1_x_at11/112+18175992..18176204hypothetical protein
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51332.1.S1_at--1023--8191Chr02:18157736..18157760 (25 bp)
GGAAGGCTACTTCAACTGCCAACAC
LOC_Os02g30530
Os.51332.1.S1_at--594--5311NONE
GAAGGTACCTATGGAGTCCACCCAA
NONE
Os.51332.1.S1_at--358--5171Chr02:18157537..18157561 (25 bp)
GCAAGGTGGATCAGCAACTCTCAAC
LOC_Os02g30530
Os.51332.1.S1_at--211--2551Chr02:18157522..18157546 (25 bp)
AACTCTCAACTTGCAAGCCATGGTG
LOC_Os02g30530
Os.51332.1.S1_at--945--811Chr02:18157503..18157527 (25 bp)
ATGGTGCCACAATCACAGGGATCTT
LOC_Os02g30530
Os.51332.1.S1_at--1131--911Chr02:18157448..18157472 (25 bp)
AGGCTTATGTTTCTGTCACTGCTGA
LOC_Os02g30530
Os.51332.1.S1_at--1036--9251Chr02:18157346..18157370 (25 bp)
TCCTCGTTATGCCACCATGGAAATC
LOC_Os02g30530
Os.51332.1.S1_at--157--7471Chr02:18157187..18157211 (25 bp)
GTGTGCTGTCATGTAATGCCATACC
LOC_Os02g30530
Os.51332.1.S1_at--630--311Chr02:18157167..18157191 (25 bp)
ATACCATATGGCCTTTTGCTACAAC
LOC_Os02g30530
Os.51332.1.S1_at--328--2211Chr02:18157147..18157171 (25 bp)
ACAACTATGTTTCAGTGCCAGACCT
LOC_Os02g30530
Os.51332.1.S1_at--7--3431Chr02:18157129..18157153 (25 bp)
CAGACCTGAATTGGCCTATGTTCAA
LOC_Os02g30530
Target Sequence 
GGAAGGCTACTTCAACTGCCAACACAACTGCTGTTAGCATGTCAAGGACACTGGCAACAAAGGAGAAGGTACCTATGGAG
TCCACCCAAGTTGTCAGGGTGAATGCAAAGGCCAAGATATCAACACAGCAAGGTGGATCAGCAACTCTCAACTTGCAAGC
CATGGTGCCACAATCACAGGGATCTTCAAGTGCATCAATTTAGATAACATCTGGGAAGGCTTATGTTTCTGTCACTGCTG
AAGAGCCACTGAGGAGGTCCAAGAAAACTGATACTTCAGGTCCATCCAAGAAGGCCAAAAAATCAAGTGCTGGAGCACTC
CTCGTTATGCCACCATGGAAATCTGACAAACTTTGAGTCAGATTCCTATGTATGTTGCTATGCCAGACTATGAAGGCTTA
ATTATCACCTGTGATGTAATGGAGCTGACAATTAGGCTTAATTATGTGTGTTGAGCACCAGACTTAAATGTTTATGTGTG
TGCTGTCATGTAATGCCATACCATATGGCCTTTTGCTACAACTATGTTTCAGTGCCAGACCTGAATTGGCCTATGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis