Browse Element(s) Details


Os.51338.1.S1_at

Description gb:AK062591.1
DB_XREF= gi:32972609
TID=Os.51338.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51338 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H01, full insert sequence.
FL= gb:AK062591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5025011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50200Os.17968.1.S1_at11/115+28683779..28690832expressed protein
LOC_Os05g50210Os.36199.1.S1_at11/115+28691695..28696569expressed protein
LOC_Os05g50220Os.10824.1.S1_at9/115+28696786..28699536Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os05g50230Os.55617.1.S1_at11/115+28703662..28704897expressed protein
LOC_Os05g50240Os.6266.1.S1_s_at11/115+28707649..28708433hypothetical protein
LOC_Os05g50250Os.51338.1.S1_at11/115+28712194..28717965NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260Os.8509.1.S1_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50260OsAffx.15177.1.S1_x_at11/115+28718592..28721019Polygalacturonase family protein, expressed
LOC_Os05g50270Os.53593.1.S1_at11/115+28734333..28735599GATA zinc finger family protein, expressed
LOC_Os05g50280Os.2310.1.S1_at11/115+28736171..28741057Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51338.1.S1_at--129--8271Chr05:28717288..28717312 (25 bp)
GGCAGAGACCTGAAGCTCGTGACGA
LOC_Os05g50250
Os.51338.1.S1_at--839--5391Chr05:28717299..28717323 (25 bp)
GAAGCTCGTGACGATTTGCCCGGCG
LOC_Os05g50250
Os.51338.1.S1_at--213--9711Chr05:28717486..28717506 (21 bp)
TCAAAGGAGCGCACGCGATGCTGGC
LOC_Os05g50250
Os.51338.1.S1_at--453--3971Chr05:28717742..28717766 (25 bp)
CGGTTCGCGCTCTGCAACGGGAAGC
LOC_Os05g50250
Os.51338.1.S1_at--223--8031Chr05:28717791..28717815 (25 bp)
GGAGGTGCACCTATGACGTCTACTA
LOC_Os05g50250
Os.51338.1.S1_at--798--4451Chr05:28717820..28717844 (25 bp)
GCCTCGTACGACTAAAAATTAAATG
LOC_Os05g50250
Os.51338.1.S1_at--38--9831Chr05:28717839..28717863 (25 bp)
TAAATGAAAGCGTCGAGTTCGTGGG
LOC_Os05g50250
Os.51338.1.S1_at--454--1231Chr05:28717854..28717878 (25 bp)
AGTTCGTGGGTGTTGCGATTCATCT
LOC_Os05g50250
Os.51338.1.S1_at--667--7751Chr05:28717862..28717886 (25 bp)
GGTGTTGCGATTCATCTTGTACAGA
LOC_Os05g50250
Os.51338.1.S1_at--332--7771Chr05:28717892..28717916 (25 bp)
GGTGCGTTAATAAACCTAGCTAGAT
LOC_Os05g50250
Os.51338.1.S1_at--705--3711Chr05:28717907..28717931 (25 bp)
CTAGCTAGATAGAACTTGTACAGTA
LOC_Os05g50250
Target Sequence 
GGCAGAGACCTGAAGCTCGTGACGATTTGCCCGGCGCTGGTCACCGGCCCAGGATTCCGCCGGCGAAACTCCACTCCGTC
CATCGCCTACCTCAAAGGAGCGCACGCGATGCTGGCGGAGGGCCTGCTTGCGACGGCGGACGTGGAGAGGGTGGCCGAGG
CGCACGTCCGCGTCTACGAGGCGATGAGCGGCGGCGGCGCGGCCGGCGGCCGGTACATCTGCTACGACCACGTCGTCCGG
CGCGGCGAGGAGTTCGCCGAGCTGCAGCGGCAGCTCGGCCTCCCGATCACCGGCGTGGCAGCTGCCTCGCGGCCCGGCTA
CTCCGACGACGGCGACGTCGGCGGCGACGGGCGGTTCGCGCTCTGCAACGGGAAGCTGGCGAGGCTGGTGTCCTCGCGGA
GGAGGTGCACCTATGACGTCTACTACCCCGCCTCGTACGACTAAAAATTAAATGAAAGCGTCGAGTTCGTGGGTGTTGCG
ATTCATCTTGTACAGAATTTTGGTGCGTTAATAAACCTAGCTAGATAGAACTTGTACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis