Browse Element(s) Details


Os.51348.1.S1_at

Description gb:AK062610.1
DB_XREF= gi:32972628
TID=Os.51348.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-A07, full insert sequence.
FL= gb:AK062610.1 gb:AK105276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2421011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24170NANA2+13994428..13999534retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24190Os.17669.1.S1_a_at11/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.38764.1.S1_x_at6/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190Os.48015.1.A1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.31813.1.S1_x_at2/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24190OsAffx.20877.1.S1_at1/112+14001044..14012252Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g24200OsAffx.24402.1.S1_at11/112+14012162..14012705hypothetical protein
LOC_Os02g24210Os.51348.1.S1_at11/112+14020003..14020667expressed protein
LOC_Os02g24210Os.51348.1.S1_x_at11/112+14020003..14020667expressed protein
LOC_Os02g24220NANA2+14030210..14031590transposon protein, putative, unclassified
LOC_Os02g24230OsAffx.1196.1.S1_at2/112+14036866..14041277Zinc knuckle family protein
LOC_Os02g24230OsAffx.1196.1.S1_x_at1/112+14036866..14041277Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51348.1.S1_at--34--8391Chr02:14020080..14020104 (25 bp)
GGCGAGCTCGATCTGCAACCGGCAC
LOC_Os02g24210
Os.51348.1.S1_at--341--5151Chr02:14020094..14020118 (25 bp)
GCAACCGGCACCGTCGCTACTAGGG
LOC_Os02g24210
Os.51348.1.S1_at--425--4831Chr02:14020109..14020133 (25 bp)
GCTACTAGGGCCACCCGATGTTGTC
LOC_Os02g24210
Os.51348.1.S1_at--86--1091Chr02:14020115..14020139 (25 bp)
AGGGCCACCCGATGTTGTCGTCGCT
LOC_Os02g24210
Os.51348.1.S1_at--909--3351Chr02:14020120..14020144 (25 bp)
CACCCGATGTTGTCGTCGCTGCTCG
LOC_Os02g24210
Os.51348.1.S1_at--312--7571Chr02:14020211..14020235 (25 bp)
GGGCGCCAGATCTGAGTGCTGGTAG
LOC_Os02g24210
Os.51348.1.S1_at--667--4151Chr02:14020359..14020383 (25 bp)
CGCGCTCTGCCGACGGGTGTCGAAA
LOC_Os02g24210
Os.51348.1.S1_at--726--3771Chr02:14020363..14020387 (25 bp)
CTCTGCCGACGGGTGTCGAAACAAG
LOC_Os02g24210
Os.51348.1.S1_at--886--9293Chr02:14020513..14020537 (25 bp)
TCCGCCGGGTGTGTTATTGATCTGA
LOC_Os02g24210
Os.51348.1.S1_at--804--4491Chr02:14020516..14020540 (25 bp)
GCCGGGTGTGTTATTGATCTGATGA
LOC_Os02g24210
Os.51348.1.S1_at--978--711Chr02:14020537..14020561 (25 bp)
ATGATCAGGTTGTGTGTCATGCCCC
LOC_Os02g24210
Target Sequence 
GGCGAGCTCGATCTGCAACCGGCACCGTCGCTACTAGGGCCACCCGATGTTGTCGTCGCTGCTCGGGCCGTCCCTCCACC
CGGCGCCTCCGTCGGGACGGGGTCGACGTTGTTGCCGCTGCTCGGTACGGGGGGCGCCAGATCTGAGTGCTGGTAGGAGA
GGAGGCGGCGGGGTCGTCGCCGCTGCATGCCGCCGGTGGGAGGAGAGGAGGGGGCGGGGGCTGGGGGGTCGTCGCCGTGT
GCCGCCTCGTCGTCCCAGCGCCGGCGCTGCCCTCGCCGCCGCGCTCTGCCGACGGGTGTCGAAACAAGAATTCGGCAATA
ATAAAAGGGGGTAGCGCATGAGACCTAAAAGTGGATGGGTGCGGAGACAAGGATTTAGACAGGTTCAGGCCCTCTCAATG
AGGTAATACCCTACTCTTGTTTGGGGATTTGAATCCGCCGGGTGTGTTATTGATCTGATGATCAGGTTGTGTGTCATGCC
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis