Browse Element(s) Details


Os.51367.2.S1_x_at

Description gb:AK066057.1
DB_XREF= gi:32976075
TID=Os.51367.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013053E16, full insert sequence.
FL= gb:AK066057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0778011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07760Os.9838.1.S1_at11/112+4044612..4052271Succinate semialdehyde dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07770OsAffx.24154.1.S1_x_at11/112+4058205..4060228transfactor, putative, expressed
LOC_Os02g07780Os.51367.2.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S2_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S1_x_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780Os.51367.1.S3_at11/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07780OsAffx.2442.1.S1_x_at1/112+4073880..4077946SBP domain containing protein, expressed
LOC_Os02g07790Os.8323.1.S1_a_at11/112+4078516..4081523Protein kinase domain containing protein, expressed
LOC_Os02g07800OsAffx.11931.1.S1_at10/112+4083020..4086044expressed protein
LOC_Os02g07810OsAffx.24155.1.S1_x_at9/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.24155.1.S1_at8/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810OsAffx.5111.1.S1_x_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07810Os.15849.2.A1_s_at1/112+4086434..4089162Leucine Rich Repeat family protein, expressed
LOC_Os02g07820Os.11392.2.S1_at11/112+4095838..4098077expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51367.2.S1_x_at--504--10251Chr02:4077240..4077264 (25 bp)
TTTGATGGAGCACCGGATCTTCAGC
LOC_Os02g07780
Os.51367.2.S1_x_at--727--9571Chr02:4077275..4077299 (25 bp)
TCTTCTGTCATCTAGTTCTTGTGGA
LOC_Os02g07780
Os.51367.2.S1_x_at--542--7511Chr02:4077295..4077319 (25 bp)
GTGGATTACCTGATCCTGTACAGCA
LOC_Os02g07780
Os.51367.2.S1_x_at--73--10611Chr02:4077392..4077416 (25 bp)
TTCTGCTTCAGCATCATGTGCCAAT
LOC_Os02g07780
Os.51367.2.S1_x_at--455--4831Chr02:4077438..4077462 (25 bp)
GCTCAGCTGGTTCGTTTTACCATGA
LOC_Os02g07780
Os.51367.2.S1_x_at--875--631Chr02:4077475..4077499 (25 bp)
ATGCTTGTCAGTCCAATTTCTTCGG
LOC_Os02g07780
Os.51367.2.S1_x_at--634--7211Chr02:4077541..4077565 (25 bp)
GTCGATTTCGACCAATATCCACCAA
LOC_Os02g07780
Os.51367.2.S1_x_at--666--10671Chr02:4077656..4077680 (25 bp)
TTGGTCTCCCCTGAACTAAAATCGA
LOC_Os02g07780
Os.51367.2.S1_x_at--1146--8871Chr02:4077687..4077711 (25 bp)
TGATGGCTTGCTTGTGTTTTCGATA
LOC_Os02g07780
Os.51367.2.S1_x_at--463--6791Chr02:4077743..4077767 (25 bp)
GTTTTCTGCCAATGTACCGATTTTC
LOC_Os02g07780
Os.51367.2.S1_x_at--1082--2371Chr02:4077768..4077792 (25 bp)
AAACTGTGGGTCTTGTCATTTATAC
LOC_Os02g07780
Target Sequence 
TTTGATGGAGCACCGGATCTTCAGCGTGCTCTCTCTCTTCTGTCATCTAGTTCTTGTGGATTACCTGATCCTGTACAGCA
AGCATCTCGCGTCATCCAATTCACAGGCGCCAGCCAAAACAACCGGGAACTTCCTCCACTTAATGGAGGGAATTCTGCTT
CAGCATCATGTGCCAATGTACAAACTATAGCACAACCGGCTCAGCTGGTTCGTTTTACCATGAATGCTAGCAGCAATGCT
TGTCAGTCCAATTTCTTCGGTTTAAACCAGATAAACTAAAGGCCTGGACTGAGAGCCCGTCGTCGATTTCGACCAATATC
CACCAAGGTGGCCTTGAGAAGATACAAGAATTGCTTCTATCAACTATCAGAGTGCAAACAATGTCACAGTTAATGTTGTC
ATCATAAATACCGGTATTGGTCTCCCCTGAACTAAAATCGAACGGAGTGATGGCTTGCTTGTGTTTTCGATAATCGTTAT
GCAGTTCTAATTTTTTTTCTATTGTTTTCTGCCAATGTACCGATTTTCAAACTGTGGGTCTTGTCATTTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51367.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis