Browse Element(s) Details


Os.51426.1.S1_at

Description gb:AK110535.1
DB_XREF= gi:32995744
TID=Os.51426.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-A08, full insert sequence.
FL= gb:AK110535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g205103/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20440NANA4+11411611..11414915transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20450NANA4+11416311..11418641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.47463.1.S1_x_at6/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.14491.2.S1_x_at4/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20474Os.7431.1.S1_a_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20474Os.7431.4.S1_x_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20490OsAffx.13888.1.S1_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20490OsAffx.13888.1.S1_x_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20500OsAffx.26080.1.S1_at11/114+11434682..11435365hypothetical protein
LOC_Os04g20510Os.51426.1.S1_at3/114+11437361..11439296retrotransposon protein, putative, unclassified
LOC_Os04g20520OsAffx.23010.1.S1_at11/114+11439692..11440112hypothetical protein
LOC_Os04g20540OsAffx.13889.1.S1_at11/114+11447363..11448839hydroquinone glucosyltransferase, putative, expressed
LOC_Os04g20550OsAffx.13890.1.S1_at11/114+11449221..11449773hypothetical protein
LOC_Os04g20560OsAffx.13891.1.S1_s_at10/114+11453212..11458989Methyl-CpG binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51426.1.S1_at--690--6291Chr04:11439069..11439093 (25 bp)
GATGATCTCCAGGACGCCATGAGAC
LOC_Os04g20510
Os.51426.1.S1_at--562--7471Chr04:11439110..11439134 (25 bp)
GTGGAAGGCCAACAAACCCGGCGCA
LOC_Os04g20510
Os.51426.1.S1_at--432--4511Chr04:11439249..11439273 (25 bp)
GCCGAGCTCGCTGAACTGCGAAAGT
LOC_Os04g20510
Os.51426.1.S1_at--965--1011Chr04:11439322..11439346 (25 bp)
AGGTACGATTATTGCGGATTGACTA
NONE
Os.51426.1.S1_at--126--6531Chr04:11439338..11439362 (25 bp)
GATTGACTACGTAAGGTTCCGCCTG
NONE
Os.51426.1.S1_at--1030--5931Chr04:11439386..11439410 (25 bp)
GAGCACTTAAGAGTTCTGCCTATAA
NONE
Os.51426.1.S1_at--28--9851Chr04:11439414..11439438 (25 bp)
TAAAGGTATTTTGGTCTGCGTGGAA
NONE
Os.51426.1.S1_at--129--931Chr04:11439475..11439499 (25 bp)
AGGCATCCAAATATCTCTTTCTCAT
NONE
Os.51426.1.S1_at--133--10171Chr04:11439524..11439548 (25 bp)
TATCTTGTTGCGTAAATCTGTCTTT
NONE
Os.51426.1.S1_at--520--5251Chr04:11439569..11439593 (25 bp)
GAATCTTTCAACTGATGCTGTTGCC
NONE
Os.51426.1.S1_at--989--9111Chr04:11439584..11439608 (25 bp)
TGCTGTTGCCACTGGAAGGATCAAT
NONE
Target Sequence 
GATGATCTCCAGGACGCCATGAGACTGCCTCGGGCGTACGAGTGGAAGGCCAACAAACCCGGCGCACCGCCGCGGAGGGT
GTTTGCTCGCGCTGCGGCCGCCATCACACCGGACCCACCGCCAGCTGGTGGCTCTACCGCCGCAGACTCCATTCCCCGAC
AGTTCCGTCGACTCTCACCGGCCGAGCTCGCTGAACTGCGAAAGTGGTGCTCCCGGTGGGGAGGATAAGATAAGGATGAC
TTTGAGTTTGGATAGGTACGATTATTGCGGATTGACTACGTAAGGTTCCGCCTGCAAAAATCATATTTTTTTAGGTGGAG
CACTTAAGAGTTCTGCCTATAAAAATAAAGGTATTTTGGTCTGCGTGGAAAAATTGATTTTCGTAGATGGACAACGAAAT
ATAAAAAGGCATCCAAATATCTCTTTCTCATTGTAATGCACCACCAATAGTGAGCTATCTTGTTGCGTAAATCTGTCTTT
ATGATCCTCATAGCTGAAAAGAATCTTTCAACTGATGCTGTTGCCACTGGAAGGATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis