Browse Element(s) Details


OsAffx.13889.1.S1_at

Description tigr:9632.m01879
TID=OsAffx.13889.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to glucosyltransferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2054011/11hydroquinone glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20474Os.7431.1.S1_a_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20474Os.7431.4.S1_x_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20490OsAffx.13888.1.S1_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20490OsAffx.13888.1.S1_x_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20500OsAffx.26080.1.S1_at11/114+11434682..11435365hypothetical protein
LOC_Os04g20510Os.51426.1.S1_at3/114+11437361..11439296retrotransposon protein, putative, unclassified
LOC_Os04g20520OsAffx.23010.1.S1_at11/114+11439692..11440112hypothetical protein
LOC_Os04g20540OsAffx.13889.1.S1_at11/114+11447363..11448839hydroquinone glucosyltransferase, putative, expressed
LOC_Os04g20550OsAffx.13890.1.S1_at11/114+11449221..11449773hypothetical protein
LOC_Os04g20560OsAffx.13891.1.S1_s_at10/114+11453212..11458989Methyl-CpG binding domain containing protein, expressed
LOC_Os04g20570OsAffx.2606.1.S1_at2/114+11468311..11470385hypothetical protein
LOC_Os04g20570OsAffx.1436.1.S1_x_at1/114+11468311..11470385hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13889.1.S1_at--967--7011Chr04:11448224..11448248 (25 bp)
GTACATCTCGTTCGGCACCAACAGC
LOC_Os04g20540
OsAffx.13889.1.S1_at--985--9391Chr04:11448231..11448255 (25 bp)
TCGTTCGGCACCAACAGCATGATAC
LOC_Os04g20540
OsAffx.13889.1.S1_at--5--2151Chr04:11448244..11448268 (25 bp)
ACAGCATGATACGACCCGAGCACAT
LOC_Os04g20540
OsAffx.13889.1.S1_at--996--7311Chr04:11448305..11448329 (25 bp)
GTGCTTCCTCTGGAAGATCAAGCCA
LOC_Os04g20540
OsAffx.13889.1.S1_at--695--6451Chr04:11448320..11448344 (25 bp)
GATCAAGCCACCAGAGGGCGATGTG
LOC_Os04g20540
OsAffx.13889.1.S1_at--985--4492Chr04:11448371..11448395 (25 bp)
GCCGTCGTCCTACAATAGATGGTTG
LOC_Os04g20540
OsAffx.13889.1.S1_at--1132--7251Chr04:11448377..11448401 (25 bp)
GTCCTACAATAGATGGTTGGCGGAA
LOC_Os04g20540
OsAffx.13889.1.S1_at--798--4271Chr04:11448437..11448482 (25 bp)
CCTGCTGGTGAGGATCCTGGCGCAC
LOC_Os04g20540
OsAffx.13889.1.S1_at--392--3951Chr04:11448577..11448601 (25 bp)
CGGAGCAGTTCCACAATGTGATGGT
LOC_Os04g20540
OsAffx.13889.1.S1_at--33--3211Chr04:11448590..11448614 (25 bp)
CAATGTGATGGTGCTCGAGGGTCTC
LOC_Os04g20540
OsAffx.13889.1.S1_at--110--1071Chr04:11448785..11448809 (25 bp)
AGGGTCTTCCTTTGAGGCGTCTCAA
LOC_Os04g20540
Target Sequence 
GTACATCTCGTTCGGCACCAACAGCATGATACGACCCGAGCACATGCTGGAGCTCGCCGCGGCGCTGGAGTCAAGCGGGC
GGTGCTTCCTCTGGAAGATCAAGCCACCAGAGGGCGATGTGGCCGGCCTCAACGGCGGCGCGACGACGCCGTCGTCCTAC
AATAGATGGTTGGCGGAAGGGTTTGAAGAGAGGGTGACGGCGAGCAAGAGAGGCCTGCTGGTGAGGATCCTGGCGCACCC
CTCGACGGCCGCGTTCTTGAGCCACTGCGGGTGGAGCTCGGTGCTGGAGAGCATGGCGCACGGCGTGCCTGTCATCGGGT
GGCTGCTGACGGCGGAGCAGTTCCACAATGTGATGGTGCTCGAGGGTCTCGGGGTGTGCGTGGAGGTGGCGAGGGGGAAC
ACGGACGAGACGGTCGTGGAGAGGAGGCGGGTGGCGGAGGTGGTGAAGATGGTGATGGGCGAGACGGCAAAGGCGGACGA
CATGAGGCGCCGGGTGCAGGAGGTGCGGACGATGATGGTGGATGCCTGGAAGGAGGAGGGAGGGTCTTCCTTTGAGGCGT
CTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13889.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis