Browse Element(s) Details


OsAffx.13888.1.S1_x_at

Description tigr:9632.m01874
TID=OsAffx.13888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2049011/11hypothetical protein
LOC_Os08g228402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20430OsAffx.13887.1.S1_at11/114+11408189..11408998hypothetical protein
LOC_Os04g20440NANA4+11411611..11414915transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20450NANA4+11416311..11418641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.47463.1.S1_x_at6/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.14491.2.S1_x_at4/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20474Os.7431.1.S1_a_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20474Os.7431.4.S1_x_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20490OsAffx.13888.1.S1_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20490OsAffx.13888.1.S1_x_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20500OsAffx.26080.1.S1_at11/114+11434682..11435365hypothetical protein
LOC_Os04g20510Os.51426.1.S1_at3/114+11437361..11439296retrotransposon protein, putative, unclassified
LOC_Os04g20520OsAffx.23010.1.S1_at11/114+11439692..11440112hypothetical protein
LOC_Os04g20540OsAffx.13889.1.S1_at11/114+11447363..11448839hydroquinone glucosyltransferase, putative, expressed
LOC_Os04g20550OsAffx.13890.1.S1_at11/114+11449221..11449773hypothetical protein
LOC_Os04g20560OsAffx.13891.1.S1_s_at10/114+11453212..11458989Methyl-CpG binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13888.1.S1_x_at--467--4771Chr04:11432038..11432062 (25 bp)
GCTGCTGCTACTGCCGATGCTACTG
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--172--3732Chr08:13605180..13605199 (20 bp)
CTACTGCCGATGCTACTGCTGTGCT
LOC_Os08g22840
OsAffx.13888.1.S1_x_at--1088--9892Chr08:13605180..13605199 (20 bp)
TACTGCCGATGCTACTGCTGTGCTG
LOC_Os08g22840
OsAffx.13888.1.S1_x_at--456--1991Chr04:11432029..11432053 (25 bp)
ACTGCCGATGCTACTGCTGTGCTGC
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--949--9171Chr04:11432027..11432051 (25 bp)
TGCCGATGCTACTGCTGTGCTGCTT
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--488--4511Chr04:11432026..11432050 (25 bp)
GCCGATGCTACTGCTGTGCTGCTTG
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--779--4051Chr04:11432024..11432048 (25 bp)
CGATGCTACTGCTGTGCTGCTTGCT
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--18--6351Chr04:11432023..11432047 (25 bp)
GATGCTACTGCTGTGCTGCTTGCTG
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--47--9091Chr04:11432021..11432045 (25 bp)
TGCTACTGCTGTGCTGCTTGCTGCC
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--795--3831Chr04:11431949..11431973 (25 bp)
CTGCTACTGCTGCATGCTGCCGCTG
LOC_Os04g20490
OsAffx.13888.1.S1_x_at--263--8952Chr11:16677404..16677539 (25 bp)
TGACATGTGGGTCCGAGGATATTTT
NONE
Target Sequence 
GCTGCTGCTACTGCCGATGCTACTGCTGTGCTGCTTGCTGCCGCTGCTGTTGCTGCCGCCGCTGCCGACTGCTGCTGCCG
CTGCCGCCGCTGCTACTGCTGCATGCTGCCGCTGCTGCTTGCTGTCGGTGAGGGGAGGGGAGAGGGAGAGGGAGAGGGAG
AGGGAGAGAAGAGAGATAAGGAGCTGACATGTGGGTCCGAGGATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13888.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis