Browse Element(s) Details


Os.7431.4.S1_x_at

Description gb:AK071659.1
DB_XREF= gi:32981682
TID=Os.7431.4
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099M10, full insert sequence.
FL= gb:AK071659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2047411/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20430OsAffx.13887.1.S1_at11/114+11408189..11408998hypothetical protein
LOC_Os04g20440NANA4+11411611..11414915transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20450NANA4+11416311..11418641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.47463.1.S1_x_at6/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.14491.2.S1_x_at4/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20474Os.7431.1.S1_a_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20474Os.7431.4.S1_x_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20490OsAffx.13888.1.S1_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20490OsAffx.13888.1.S1_x_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20500OsAffx.26080.1.S1_at11/114+11434682..11435365hypothetical protein
LOC_Os04g20510Os.51426.1.S1_at3/114+11437361..11439296retrotransposon protein, putative, unclassified
LOC_Os04g20520OsAffx.23010.1.S1_at11/114+11439692..11440112hypothetical protein
LOC_Os04g20540OsAffx.13889.1.S1_at11/114+11447363..11448839hydroquinone glucosyltransferase, putative, expressed
LOC_Os04g20550OsAffx.13890.1.S1_at11/114+11449221..11449773hypothetical protein
LOC_Os04g20560OsAffx.13891.1.S1_s_at10/114+11453212..11458989Methyl-CpG binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7431.4.S1_x_at--1--10331Chr04:11427530..11427554 (25 bp)
TTTCTATATGTATGTCTTGCCTGAG
LOC_Os04g20474
Os.7431.4.S1_x_at--609--2771Chr04:11427626..11427650 (25 bp)
AAGAGCAGGACTCCTGGTCGCAGTT
LOC_Os04g20474
Os.7431.4.S1_x_at--467--7491Chr04:11427750..11427774 (25 bp)
GTGGGTTTGTGGAACACCTGGACTT
LOC_Os04g20474
Os.7431.4.S1_x_at--472--2171Chr04:11427763..11427787 (25 bp)
ACACCTGGACTTGTGGCTCTATGGG
LOC_Os04g20474
Os.7431.4.S1_x_at--1074--1751Chr04:11427825..11427849 (25 bp)
ACCTGGACTTGTGGAGGTGCACCTG
LOC_Os04g20474
Os.7431.4.S1_x_at--300--1051Chr04:11427839..11427863 (25 bp)
AGGTGCACCTGGACTTGTGGCTCTA
LOC_Os04g20474
Os.7431.4.S1_x_at--327--4931Chr04:11427727..11427751 (25 bp)
GCTTGTGGCTTGGACCTGGACTTGT
LOC_Os04g20474
Os.7431.4.S1_x_at--112--8531Chr04:11427899..11427923 (25 bp)
TGGAACACCTGGACTTGTGGGCGCA
LOC_Os04g20474
Os.7431.4.S1_x_at--370--4591Chr04:11427919..11427943 (25 bp)
GCGCACCTGGACTTGTAGCTTTATG
LOC_Os04g20474
Os.7431.4.S1_x_at--519--8491Chr04:11427950..11427974 (25 bp)
TGGCTTGGACTTCTGGCCTGGCCTA
LOC_Os04g20474
Os.7431.4.S1_x_at--688--4451Chr04:11427970..11427994 (25 bp)
GCCTACTGGGCTGGCGCTAGAGAAA
LOC_Os04g20474
Target Sequence 
TTTCTATATGTATGTCTTGCCTGAGAAATCTGTAAAATCGTGATCGGGTGAGCNCTNANNATAGTGGAAGAAAGAAGAAA
AGGAAAACGGAATAGCAAGAGCAGGACTCCTGGTCGCAGTTGGNGCAAACCGGAGTAGGAGTGGGGGTGCACCTGGGCTT
GTGGGCTTGTGGTGCACCTGGACTTGTGGCTCTATGGGCTTGTGGCTTGGACCTGGACTTGTGGGTTTGTGGAACACCTG
GACTTGTGGCTCTATGGGCTTGTGNCTTGGACCTGGACTTGTGGGTTTGTGGANCACCTGGACTTGTGGAGGTGCACCTG
GACTTGTGGCTCTATGGGCTTGTGGCTTGGACCTGGACTTGTGGGTTTNTGGAACACCTGGACTTGTGGGCGCACCTGGA
CTTGTAGCTTTATGGGCTTGTGGCTTGGACTTCTGGCCTGGCCTACTGGGCTGGCGCTAGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7431.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis