Browse Element(s) Details


OsAffx.13891.1.S1_s_at

Description tigr:9632.m01881
TID=OsAffx.13891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Methyl-CpG binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2056010/11Methyl-CpG binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20474Os.7431.1.S1_a_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20474Os.7431.4.S1_x_at11/114+11425847..11431046UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g20490OsAffx.13888.1.S1_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20490OsAffx.13888.1.S1_x_at11/114+11431823..11432128hypothetical protein
LOC_Os04g20500OsAffx.26080.1.S1_at11/114+11434682..11435365hypothetical protein
LOC_Os04g20510Os.51426.1.S1_at3/114+11437361..11439296retrotransposon protein, putative, unclassified
LOC_Os04g20520OsAffx.23010.1.S1_at11/114+11439692..11440112hypothetical protein
LOC_Os04g20540OsAffx.13889.1.S1_at11/114+11447363..11448839hydroquinone glucosyltransferase, putative, expressed
LOC_Os04g20550OsAffx.13890.1.S1_at11/114+11449221..11449773hypothetical protein
LOC_Os04g20560OsAffx.13891.1.S1_s_at10/114+11453212..11458989Methyl-CpG binding domain containing protein, expressed
LOC_Os04g20570OsAffx.2606.1.S1_at2/114+11468311..11470385hypothetical protein
LOC_Os04g20570OsAffx.1436.1.S1_x_at1/114+11468311..11470385hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13891.1.S1_s_at--306--8151Chr04:11456564..11456588 (25 bp)
GGACAAGTGTTCATGACCTCTACTC
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--467--5831Chr04:11456550..11456574 (25 bp)
GACCTCTACTCTTTTGAGAAGTCCG
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--324--5971NONE
GAGAAGTCCGCAGATCTGCATGAAA
NONE
OsAffx.13891.1.S1_s_at--880--4731Chr04:11455551..11455575 (25 bp)
GCAGCTAGGACTAACCGGAAATCCA
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--315--6931Chr04:11453606..11453628 (23 bp)
GTATGGTGACTCCTCTGATGATTTA
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--244--3051Chr04:11453514..11453538 (25 bp)
AATCGGTATCCTTTAACACTGCCAA
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--464--1991Chr04:11453497..11453521 (25 bp)
ACTGCCAAGCGTCCTGTTGGGAGAC
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--254--2291Chr04:11453451..11453475 (25 bp)
AAATGCCTCGTGACGTGGAAATCAA
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--331--5511Chr04:11453391..11453415 (25 bp)
GAAAATTGTGACTCGATCGGGCTGA
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--873--9811Chr04:11453303..11453327 (25 bp)
TAACTCTAGTATTCCTTTTGCCTCT
LOC_Os04g20560
OsAffx.13891.1.S1_s_at--200--211Chr04:11453275..11453299 (25 bp)
ATTTCCATCTCCACAGGACACTGTA
LOC_Os04g20560
Target Sequence 
GGACAAGTGTTCATGACCTCTACTCTTTTGAGAAGTCCGCAGATCTGCATGAAAGTCTGAAGAAAAGACTAGACTTTGCA
GCTAGGACTAACCGGAAATCCAGAAGATCATTGAAATCCAAAAACTCATCGCTTACAGAAAAGTCACTCAGTGATGAGGA
AAGTTCATATAAGTATGGTGACTCCTCTGATGATTTATCAGATTCATCAAGCGAGGTTAAAAAAAACAAGGGCAAGCTTG
AGAAGACTACATGCAAAACCAAAAAATCGGTATCCTTTAACACTGCCAAGCGTCCTGTTGGGAGACCCTCAAAAAGATCC
ACTGAGGAAATGCCTCGTGACGTGGAAATCAAACAAGAGAGTGCAAGTAGCGAAGAATATTGGTGCTGAAAATTGTGACT
CGATCGGGCTGAAGAAGAAATTATGCTCGTATTTCTTTTCCTTTAGATCAATAAGAAGAAGGCATATCAAAACTTTAACT
CTAGTATTCCTTTTGCCTCTCCAATTTCCATCTCCACAGGACACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13891.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis