Browse Element(s) Details


Os.51444.1.S1_at

Description gb:AK062823.1
DB_XREF= gi:32972841
TID=Os.51444.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F05, full insert sequence.
FL= gb:AK062823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1020411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g10170NANA9+5526640..5532450retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g10180NANA9+5538419..5538931hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.29786.1.S1_x_at10/119+5542051..5544026hypothetical protein
LOC_Os09g10190OsAffx.23450.1.S1_at2/119+5542051..5544026hypothetical protein
LOC_Os09g10190Os.46012.1.S1_at1/119+5542051..5544026hypothetical protein
LOC_Os09g10200Os.55370.1.S1_at11/119+5553239..5554029SKP1-like protein 1A, putative, expressed
LOC_Os09g10204Os.51444.1.S1_at11/119+5555531..5556221expressed protein
LOC_Os09g10210OsAffx.6222.1.S1_x_at11/119+5558196..5558420hypothetical protein
LOC_Os09g10220Os.45173.1.S1_x_at6/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_x_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10220Os.45976.1.S1_at1/119+5562389..5571172transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g10230OsAffx.29787.1.S1_at11/119+5573829..5574332SKP1-like protein 1A, putative
LOC_Os09g10240NANA9+5575424..5582937retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51444.1.S1_at--771--9551Chr09:5555749..5555773 (25 bp)
TCTTGCCGGCCGTCGGGAATACACT
LOC_Os09g10204
Os.51444.1.S1_at--710--8551Chr09:5555818..5555842 (25 bp)
TGGAGTTCAGCGTCAGAGCCCGCAC
LOC_Os09g10204
Os.51444.1.S1_at--1136--4511Chr09:5555883..5555907 (25 bp)
GCCGCATGGCTTCGTACAATGGAGA
LOC_Os09g10204
Os.51444.1.S1_at--931--7031Chr09:5555896..5555920 (25 bp)
GTACAATGGAGAACGCTGCACTGTT
LOC_Os09g10204
Os.51444.1.S1_at--959--2591Chr09:5555907..5555931 (25 bp)
AACGCTGCACTGTTTCCTGTGCCCG
LOC_Os09g10204
Os.51444.1.S1_at--66--3333Chr12:20038975..20039029 (25 bp)
CACTGTTTCCTGTGCCCGCGAGGTG
NONE
Os.51444.1.S1_at--146--4191Chr09:5555953..5555977 (25 bp)
CCCGAGGTTGTGTGGTTCTGTATTG
LOC_Os09g10204
Os.51444.1.S1_at--521--8773Chr09:5555971..5555995 (25 bp)
TGTATTGTGAAATGCCCTGCCCCTG
LOC_Os09g10204
Os.51444.1.S1_at--262--3033Chr09:5555981..5556005 (25 bp)
AATGCCCTGCCCCTGCTCTGTGGTT
LOC_Os09g10204
Os.51444.1.S1_at--827--11Chr09:5556010..5556034 (25 bp)
ATTGTGGAAAATGCCCTAGTCCTGC
LOC_Os09g10204
Os.51444.1.S1_at--448--1231Chr09:5556164..5556188 (25 bp)
AGTTCTGATATGCTGAACAGAGATT
LOC_Os09g10204
Target Sequence 
TCTTGCCGGCCGTCGGGAATACACTCCGCCCACGCCGCACCTCCAATTTCGGTGGCCTCGACTCGTTGATGGAGTTCAGC
GTCAGAGCCCGCACCGGTTGGCCGCCCACTTCGTCGCCAGCGAGGGGGGACACCGCCGCATGGCTTCGTACAATGGAGAA
CGCTGCACTGTTTCCTGTGCCCGCGAGGTGTTTGTGGAAATGCCCCCGAGGTTGTGTGGTTCTGTATTGTGAAATGCCCT
GCCCCTGCTCTGTGGTTCTGTATTGTGGAAAATGCCCTAGTCCTGCCCTGCTGCCTGGGATGATGCAGACTCCTAATTGG
AAGTGAATTGTTATTGTTTGGCATTGTGAGTTTGGGCAAATTGATTATGTAATCTTGATTTTTGTCATAAAAAAAATGGT
GAAACATGATTCAGCAGTTCTGATATGCTGAACAGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis