Browse Element(s) Details


Os.51453.1.S1_x_at

Description gb:AK062841.1
DB_XREF= gi:32972859
TID=Os.51453.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-H05, full insert sequence.
FL= gb:AK062841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g314106/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31370OsAffx.25317.1.S1_at10/113+17827085..17828044hypothetical protein
LOC_Os03g31370OsAffx.26847.1.S1_x_at1/113+17827085..17828044hypothetical protein
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein
LOC_Os03g31390OsAffx.25318.1.S1_at11/113+17837820..17838547hypothetical protein
LOC_Os03g31400Os.10677.2.S1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31400Os.10677.1.A1_at11/113+17839850..17846915U-box domain containing protein, expressed
LOC_Os03g31410Os.51453.1.S1_x_at6/113+17848145..17848436hypothetical protein
LOC_Os03g31430Os.54400.1.S1_at10/113+17857604..17867420Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os03g31440OsAffx.25320.1.S1_at10/113+17869807..17871282hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51453.1.S1_x_at--87--4151Chr03:17848054..17848078 (25 bp)
CGCGGCCGCCAGAAAGGGCATATGA
NONE
Os.51453.1.S1_x_at--1071--8251Chr03:17848186..17848210 (25 bp)
GGCATCGGCGAGGTTGACTAAGCAA
LOC_Os03g31410
Os.51453.1.S1_x_at--1162--9771Chr03:17848204..17848228 (25 bp)
TAAGCAAGAGGCAAGCGTCAACAGA
LOC_Os03g31410
Os.51453.1.S1_x_at--571--4431Chr03:17848329..17848353 (25 bp)
GCCATCGTCAGCATCCTATATGATT
LOC_Os03g31410
Os.51453.1.S1_x_at--1152--6634Chr03:17848364..17848388 (25 bp)
GTTGTTATCAGGGATGCGCTGGAAC
LOC_Os03g31410
Os.51453.1.S1_x_at--946--291Chr03:17848390..17848414 (25 bp)
ATAGCACAGGACTAGGGCCGCTGGA
LOC_Os03g31410
Os.51453.1.S1_x_at--781--8411Chr03:17848405..17848429 (25 bp)
GGCCGCTGGACATCATCGACGCTAG
LOC_Os03g31410
Os.51453.1.S1_x_at--255--2471Chr03:17848444..17848939 (25 bp)
AACAACAGGTCACTCTTGTCGTCAA
NONE
Os.51453.1.S1_x_at--629--7092Chr03:17848923..17848947 (25 bp)
GTCACTCTTGTCGTCAAACACTTTG
NONE
Os.51453.1.S1_x_at--1113--7332Chr03:17848966..17848990 (25 bp)
GTGCAGACTTGAAAGATCTTCTTCT
NONE
Os.51453.1.S1_x_at--515--9571Chr03:17848988..17849012 (25 bp)
TCTTCTTCAATCAATATCTGTTCTT
NONE
Target Sequence 
CGCGGCCGCCAGAAAGGGCATATGAGGTGGCGGAGAGTCTTTCTAGGAGGAGAAGAGGGGGCCATTGAAGGAGGGTTGGA
GGTCGCTGCGCATGGCCCGTGGGCGGCGGAGCGATGAGGCCGGGAGGACGTCGGCATCGGCGAGGTTGACTAAGCAAGAG
GCAAGCGTCAACAGAGGTGCCGGGGAGGAGCAGGCCGCCGGCGCGGTCGCAGGAGAAGGTGCCGACCGGAGGCAGAGACG
AGGACCCCTAGGACCGCACCCGCCCCACCACTGCTGCCATCGTCAGCATCCTATATGATTTTTCNTTGTTGTTGTTATCA
GGGATGCGCTGGAACGATAGCACAGGACTAGGGCCGCTGGACATCATCGACGCTAGCAGATNAGGACACCAACAACAGGT
CACTCTTGTCGTCAAACACTTTGATGATCCAAGGATAGTGAGTGCAGACTTGAAAGATCTTCTTCTTCTTCAATCAATAT
CTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51453.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis