Browse Element(s) Details


Os.51469.1.S1_at

Description gb:AK062879.1
DB_XREF= gi:32972897
TID=Os.51469.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-D03, full insert sequence.
FL= gb:AK062879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2147010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21410OsAffx.12147.1.S1_at11/112+12712137..12714191hypothetical protein
LOC_Os02g21420NANA2+12717115..12717819hypothetical protein
LOC_Os02g21430Os.19622.1.S1_at10/112+12720934..12728929RNA recognition motif 2 family protein, expressed
LOC_Os02g21440OsAffx.2708.1.S1_x_at11/112+12729564..12729896hypothetical protein
LOC_Os02g21440OsAffx.2708.1.S1_at10/112+12729564..12729896hypothetical protein
LOC_Os02g21450OsAffx.12148.1.S1_at11/112+12730855..12731109hypothetical protein
LOC_Os02g21460Os.27095.1.A1_at8/112+12731905..12735277glutathione S-transferase, putative, expressed
LOC_Os02g21470Os.51469.1.S1_at10/112+12735761..12736170expressed protein
LOC_Os02g21480OsAffx.24368.1.S1_at11/112+12737804..12738814hypothetical protein
LOC_Os02g21490Os.48039.1.A1_at11/112+12741611..12746532Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein
LOC_Os02g21510Os.54297.1.S1_at11/112+12758247..12762201NOL1/NOP2/sun family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51469.1.S1_at--307--2951Chr02:12736070..12736094 (25 bp)
AAGGCGGCGCTAGGAGCTCCAGCCA
LOC_Os02g21470
Os.51469.1.S1_at--1020--891Chr02:12736046..12736070 (25 bp)
AGGCTCTCGACGGTGGCGCTTATAT
LOC_Os02g21470
Os.51469.1.S1_at--921--4571Chr02:12736031..12736055 (25 bp)
GCGCTTATATCAGGGTGATGCTCTT
LOC_Os02g21470
Os.51469.1.S1_at--155--9212Chr12:10774574..10774598 (25 bp)
TGCCAGCGGCAGTTAGGATCTTAAT
NONE
Os.51469.1.S1_at--8--7511Chr02:12735933..12735957 (25 bp)
GTGGTCAGAAGCTCGGTGATGCCCC
LOC_Os02g21470
Os.51469.1.S1_at--1064--4572Chr12:10774458..10774481 (24 bp)
GCGCTCATGGGCTACTGGGCTAGAA
NONE
Os.51469.1.S1_at--813--1291Chr02:12735878..12735902 (25 bp)
AGATGCTGCCAGTTGCACAGCTGAC
LOC_Os02g21470
Os.51469.1.S1_at--570--10652Chr12:10774409..10774433 (25 bp)
TTCCCGTCCTTTAATTTCAGCGAAG
NONE
Os.51469.1.S1_at--907--10511Chr02:12735838..12735862 (25 bp)
TTCAGCGAAGCTCAATAGCTCACCC
LOC_Os02g21470
Os.51469.1.S1_at--94--9691Chr02:12735819..12735843 (25 bp)
TCACCCACCTATTTCTTTCGTGGTA
LOC_Os02g21470
Os.51469.1.S1_at--361--2512Chr12:10774317..10774341 (25 bp)
AACTTCGTTGTTACTCTTGCTTACT
NONE
Target Sequence 
AAGGCGGCGCTAGGAGCTCCAGCCAGGCTCTCGACGGTGGCGCTTATATCAGGGTGATGCTCTTGCCAGCGGCAGTTAGG
ATCTTAATGAAATCTCAAGAGGCAAAGATCAGGGGTCCGGCGAAGCTCTCGGCGGTGGTGGTCAGAAGCTCGGTGATGCC
CCCCAGCTGCGCTCATGGGCTACTGGGCTAGAAGATGCTGCCAGTTGCACAGCTGACTTCCCGTCCTTTAATTTCAGCGA
AGCTCAATAGCTCACCCACCTATTTCTTTCGTGGTACAAATATACTGGTGTTGATTTTTGGTGGAAAAAAACTTCGTTGT
TACTCTTGCTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis