Browse Element(s) Details


Os.51485.1.S1_at

Description gb:AK062928.1
DB_XREF= gi:32972946
TID=Os.51485.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51485 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-A04, full insert sequence.
FL= gb:AK062928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2579910/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g25734OsAffx.29350.1.S1_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25734Os.178.1.S1_a_at11/118+15533366..15539740Glucose-1-phosphate adenylyltransferase small subunit, chloroplast precursor, putative, expressed
LOC_Os08g25750NANA8+15543967..15547038retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25760OsAffx.10633.1.S1_at5/118+15547807..15550262retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g25770OsAffx.17156.1.S1_at10/118+15554569..15555717hypothetical protein
LOC_Os08g25780OsAffx.29351.1.S1_at10/118+15557429..15558641hypothetical protein
LOC_Os08g25780Os.29923.1.S1_at1/118+15557429..15558641hypothetical protein
LOC_Os08g25799Os.15464.1.S1_at11/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25799Os.51485.1.S1_at10/118+15562691..15571116myb family transcription factor, putative, expressed
LOC_Os08g25820OsAffx.5926.1.S1_at11/118+15579312..15583536transfactor, putative, expressed
LOC_Os08g25830NANA8+15585233..15586174hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010088biological_processphloem histogenesis
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51485.1.S1_at--307--7571NONE
GGGCCCGACAGATGCTCCTTGTAGT
NONE
Os.51485.1.S1_at--34--6351Chr08:15565270..15565294 (25 bp)
GATGCTCCTTGTAGTGGATCAGCAG
LOC_Os08g25799
Os.51485.1.S1_at--878--9651Chr08:15565288..15565312 (25 bp)
TCAGCAGGAGTTGGTGCATTTTCTT
LOC_Os08g25799
Os.51485.1.S1_at--274--3551Chr08:15565304..15565328 (25 bp)
CATTTTCTTGTTGCCCTTTTGTTAT
LOC_Os08g25799
Os.51485.1.S1_at--662--4531Chr08:15565316..15565340 (25 bp)
GCCCTTTTGTTATGCAAGTCTGCCT
LOC_Os08g25799
Os.51485.1.S1_at--299--2851Chr08:15565331..15565355 (25 bp)
AAGTCTGCCTTGTTTCGTTTGAAAG
LOC_Os08g25799
Os.51485.1.S1_at--680--8951Chr08:15565350..15565374 (25 bp)
TGAAAGTGGATTCCGGTTTGTTTCT
LOC_Os08g25799
Os.51485.1.S1_at--902--8331Chr08:15565361..15565385 (25 bp)
TCCGGTTTGTTTCTGGCAGTGAACT
LOC_Os08g25799
Os.51485.1.S1_at--492--8271Chr08:15565375..15565399 (25 bp)
GGCAGTGAACTTATTATTGAAGCTT
LOC_Os08g25799
Os.51485.1.S1_at--773--6871Chr08:15565414..15565438 (25 bp)
GTATTGATTCTGATCTTCATGCGGT
LOC_Os08g25799
Os.51485.1.S1_at--304--6431Chr08:15565425..15565449 (25 bp)
GATCTTCATGCGGTTGATCAAGAAG
LOC_Os08g25799
Target Sequence 
GGGCCCGACAGATGCTCCTTGTAGTGGATCAGCAGGAGTTGGTGCATTTTCTTGTTGCCCTTTTGTTATGCAAGTCTGCC
TTGTTTCGTTTGAAAGTGGATTCCGGTTTGTTTCTGGCAGTGAACTTATTATTGAAGCTTTTGATAAGACAAATGTATTG
ATTCTGATCTTCATGCGGTTGATCAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51485.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis