Browse Element(s) Details


Os.51490.1.S1_at

Description gb:AK062939.1
DB_XREF= gi:32972957
TID=Os.51490.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B06, full insert sequence.
FL= gb:AK062939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2867011/11ripening induced protein, putative, expressed
LOC_Os01g229541/11Serine carboxypeptidase II precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28620NANA8+17354449..17354676retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.22699.1.S1_x_at2/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28630OsAffx.16111.1.S1_at1/118+17357764..17363983retrotransposon protein, putative, unclassified
LOC_Os08g28640OsAffx.17213.1.S1_x_at11/118+17364476..17366727hypothetical protein
LOC_Os08g28650OsAffx.29404.1.S1_at9/118+17367614..17369285hypothetical protein
LOC_Os08g28660OsAffx.5968.1.S1_at11/118+17373312..17374386hypothetical protein
LOC_Os08g28670Os.51490.1.S1_at11/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_at10/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28670Os.9301.1.S1_x_at8/118+17377243..17378834ripening induced protein, putative, expressed
LOC_Os08g28680Os.10883.1.S1_at11/118+17380193..17383258Ubiquitin-conjugating enzyme E2 M, putative, expressed
LOC_Os08g28690Os.9391.1.S1_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.48160.1.A1_s_at11/118+17385534..17390235expressed protein
LOC_Os08g28690Os.9391.1.S2_at11/118+17385534..17390235expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51490.1.S1_at--249--5871Chr08:17377644..17377668 (25 bp)
GAGCGCCAACGGAGACCGCGTGCAC
LOC_Os08g28670
Os.51490.1.S1_at--489--7311Chr08:17377582..17377606 (25 bp)
GTGCTGTTGCTTGCTGCCGTGTGAA
LOC_Os08g28670
Os.51490.1.S1_at--403--9071Chr08:17377552..17377576 (25 bp)
TGCTTGAGAAGGTGCAGCTGCTGCT
LOC_Os08g28670
Os.51490.1.S1_at--706--9111Chr08:17377527..17377551 (25 bp)
TGCTGCTTGAGAAAGTGCTGCGGCT
LOC_Os08g28670
Os.51490.1.S1_at--1131--1451Chr08:17377494..17377518 (25 bp)
AGAAGGTGAGGATTTTCTGCTGCTG
LOC_Os08g28670
Os.51490.1.S1_at--210--6531Chr08:17377450..17377474 (25 bp)
GATTTGGTCAGATTGAGGTCTCACA
LOC_Os08g28670
Os.51490.1.S1_at--676--6591Chr08:17377440..17377464 (25 bp)
GATTGAGGTCTCACAGCAAGAAAAG
LOC_Os08g28670
Os.51490.1.S1_at--1145--292Chr01:12893425..12893449 (25 bp)
ATAGCTGCTATTAACTTGCTGTAAT
LOC_Os01g22954
Os.51490.1.S1_at--773--9991Chr08:17377288..17377312 (25 bp)
TAGCGAGACATCTAATACCAGCCAT
LOC_Os08g28670
Os.51490.1.S1_at--726--9971Chr08:17377273..17377297 (25 bp)
TACCAGCCATGCGATTGTTTCTCAT
LOC_Os08g28670
Os.51490.1.S1_at--698--4631Chr08:17377263..17377287 (25 bp)
GCGATTGTTTCTCATGTTGAATCAG
LOC_Os08g28670
Target Sequence 
GAGCGCCAACGGAGACCGCGTGCACGGAGGGCAAGTTGGCGACGGCGTGTGGAGAGAAGAAGGTGCTGTTGCTTGCTGCC
GTGTGAAGGTGCTGCTTGAGAAGGTGCAGCTGCTGCTTGCTGCTTGAGAAAGTGCTGCGGCTGCTGCTCGAGAAGGTGAG
GATTTTCTGCTGCTGCTGCTGCTGAGAAGGTGAGGATTTGGTCAGATTGAGGTCTCACAGCAAGAAAAGAAGGGGAAGAG
ATTAACTTGTGGAGGCAAGAAGAAGGGATATAGCTGCTATTAACTTGCTGTAATAGGGAAAACCAAGGGATTGAATAGGT
GATGGGTAAATTGGTAGATATGCTTGCTAAGAAATTTAGCGAGACATCTAATACCAGCCATGCGATTGTTTCTCATGTTG
AATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51490.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis