Browse Element(s) Details


Os.51531.1.S1_at

Description gb:AK063012.1
DB_XREF= gi:32973030
TID=Os.51531.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51531 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A06, full insert sequence.
FL= gb:AK063012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4093010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40890OsAffx.7369.1.S1_at11/1111+23975225..23979516Leucine Rich Repeat family protein, expressed
LOC_Os11g40900OsAffx.31415.2.S1_s_at11/1111+23984119..23985325hypothetical protein
LOC_Os11g40910OsAffx.19287.2.S1_s_at11/1111+23985841..23987812hypothetical protein
LOC_Os11g40920OsAffx.30966.3.A1_x_at11/1111+23988896..23998405AT hook motif-containing protein, putative
LOC_Os11g40930Os.51531.1.S1_at10/1111+24002891..24003612expressed protein
LOC_Os11g40940OsAffx.22759.1.S1_at7/1111+24006502..24010033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40940Os.36476.1.S1_at1/1111+24006502..24010033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40950NANA11+24015659..24018991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g40960Os.14491.2.S1_x_at4/1111+24020435..24025516transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g40960Os.47463.1.S1_x_at3/1111+24020435..24025516transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51531.1.S1_at--446--10771Chr11:24003434..24003455 (22 bp)
TTGAGTGAACCTAAAGATCGCCTTT
LOC_Os11g40930
Os.51531.1.S1_at--566--2791Chr11:24003421..24003445 (25 bp)
AAGATCGCCTTTCTTAAGCGTCTTG
LOC_Os11g40930
Os.51531.1.S1_at--1086--1631Chr11:24003405..24003429 (25 bp)
AGCGTCTTGTTAGTTCTTACCGTCG
LOC_Os11g40930
Os.51531.1.S1_at--524--6811Chr11:24003381..24003405 (25 bp)
GTTTGAGCCGACACGACGACTAATC
LOC_Os11g40930
Os.51531.1.S1_at--57--1851Chr11:24003366..24003390 (25 bp)
ACGACTAATCTGTAGCGCGCAACGG
LOC_Os11g40930
Os.51531.1.S1_at--555--5131Chr11:24003348..24003372 (25 bp)
GCAACGGTCCGCAAGAGTTTCTATA
LOC_Os11g40930
Os.51531.1.S1_at--22--2931Chr11:24003299..24003323 (25 bp)
AAGGCACTTACAACCAACTATCGAT
LOC_Os11g40930
Os.51531.1.S1_at--249--5451Chr11:24003188..24003212 (25 bp)
GAACGAACCAGGCTGCCAGTGATAA
LOC_Os11g40930
Os.51531.1.S1_at--350--8291Chr11:24003140..24003164 (25 bp)
GGCATTGAACTAGCACCATATGTCT
LOC_Os11g40930
Os.51531.1.S1_at--839--10031Chr11:24003049..24003073 (25 bp)
TAGATGGTACGCTGCAAGTTGTTGC
LOC_Os11g40930
Os.51531.1.S1_at--222--6891Chr11:24002891..24002915 (25 bp)
GTATAGTATGTCTTTTTACCCTGTC
NONE
Target Sequence 
TTGAGTGAACCTAAAGATCGCCTTTCTTAAGCGTCTTGTTAGTTCTTACCGTCGTTTGAGCCGACACGACGACTAATCTG
TAGCGCGCAACGGTCCGCAAGAGTTTCTATAGATAAATTCTCTCTGACGGAAAGGAAGGCACTTACAACCAACTATCGAT
GGAGTAGGCGGATGCTGGCCCCGGGAAACACCGTCGTGGCGCCGCCGTCGTCGGGGATGGCAATCGAAGGTTCGGAGATG
GCAGCCGAACGAACCAGGCTGCCAGTGATAAGAAGCAGGATCATCAGAAACATGGGCATTGAACTAGCACCATATGTCTG
TGGTTTGGGGCCTCGGCGAGGAGAAATATATACACCTATAAATTCACTGCAGCCTATATATATACTAGATGGTACGCTGC
AAGTTGTTGCGAGAGAATTATGTGATAATATAGTAGATATGAGTTCTAAAATTTTCTTTCTTACCTACTATACGATTTTT
TTCACGTGTTTATATATTTTTGTACTTTTATCAATTATCCAAAAAAATAGTTATGCTTGGGTTGTATAGTATGTCTTTTT
ACCCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis