Browse Element(s) Details


Os.51544.1.S1_at

Description gb:AK063038.1
DB_XREF= gi:32973056
TID=Os.51544.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D02, full insert sequence.
FL= gb:AK063038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g348709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34850Os.21363.1.S1_at10/118+21787690..21799814hypothetical protein
LOC_Os08g34850OsAffx.25854.1.S1_at5/118+21787690..21799814hypothetical protein
LOC_Os08g34850OsAffx.27864.4.S1_x_at1/118+21787690..21799814hypothetical protein
LOC_Os08g34860NANA8+21802898..21805298F-box domain containing protein
LOC_Os08g34870Os.51544.1.S1_at9/118+21810502..21811654hypothetical protein
LOC_Os08g34870OsAffx.6024.1.S1_at7/118+21810502..21811654hypothetical protein
LOC_Os08g34880OsAffx.17337.1.S1_at11/118+21818078..21820424expressed protein
LOC_Os08g34890NANA8+21834571..21836926F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51544.1.S1_at--403--8211Chr08:21813500..21813524 (25 bp)
GGAATCCTGCAATGGCTCACCCAGC
NONE
Os.51544.1.S1_at--814--1631Chr08:21813478..21813502 (25 bp)
AGCGAGCAACTCGAAGGCCACACAG
NONE
Os.51544.1.S1_at--572--1711Chr08:21811475..21811596 (25 bp)
ACCACCTCGGCCAGTAGGAGTTCAG
LOC_Os08g34870
Os.51544.1.S1_at--819--7551Chr08:21811434..21811458 (25 bp)
GGGCCATGGCCGACAATGCAACCAA
LOC_Os08g34870
Os.51544.1.S1_at--48--7771Chr08:21811104..21811128 (25 bp)
GGTGACATTGCGTGCTGTACATGAT
LOC_Os08g34870
Os.51544.1.S1_at--381--10391Chr08:21811059..21811083 (25 bp)
TTTTCCCGTGATGGGATGTGGGCTC
LOC_Os08g34870
Os.51544.1.S1_at--105--8331Chr08:21811039..21811063 (25 bp)
GGCTCTGGGCTCTGGTCACGCGAAC
LOC_Os08g34870
Os.51544.1.S1_at--1067--5411Chr08:21811018..21811042 (25 bp)
GAACCAGTGGACTTCCTTTTCTCAT
LOC_Os08g34870
Os.51544.1.S1_at--353--9531Chr08:21810999..21811023 (25 bp)
TCTCATGTGGTGTGTTGCGGGCTAT
LOC_Os08g34870
Os.51544.1.S1_at--431--8311Chr08:21810973..21810997 (25 bp)
GGCTATGTGAACTTAGTGGGCTTTT
LOC_Os08g34870
Os.51544.1.S1_at--589--10831Chr08:21810927..21810951 (25 bp)
TTGTGATGGGCCTTTTGTTTCTTCA
LOC_Os08g34870
Target Sequence 
GGAATCCTGCAATGGCTCACCCAGCGAGCAACTCGAAGGCCACACAGCTCCACACGCCGTCTGTGTCCTCATTGTAGTCG
CCTCCATCCTCCTCAAGGGCCTCCTCCACCACCTCGGCCAGTAGGAGTTCAGAGAAAGAGGAGCATAGGGGCCATGGCCG
ACAATGCAACCAAAAGGCACGCAGGATTGGTGAGGTGACATTGCGTGCTGTACATGATTTCTTTGTATTTGGGCTTTTTT
TTCCCGTGATGGGATGTGGGCTCTGGGCTCTGGTCACGCGAACCAGTGGACTTCCTTTTCTCATGTGGTGTGTTGCGGGC
TATGGGCTATGTGAACTTAGTGGGCTTTTTGTTGTATTTTTGTGTACAAATTGTGATGGGCCTTTTGTTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis