Browse Element(s) Details


Os.51583.1.S1_at

Description gb:AK063111.1
DB_XREF= gi:32973129
TID=Os.51583.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51583 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-D07, full insert sequence.
FL= gb:AK063111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2320011/11Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23150OsAffx.7670.1.S1_at6/1112+13092756..13093942P-nitrophenylphosphatase, putative, expressed
LOC_Os12g23160OsAffx.31842.1.S1_at11/1112+13096187..13096750hypothetical protein
LOC_Os12g23170Os.4956.1.S1_at11/1112+13096990..13100112Glycosyl hydrolase family 1 protein, expressed
LOC_Os12g23180Os.46071.1.S1_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23180Os.46071.1.S1_x_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23190Os.53270.1.S1_at9/1112+13108419..13111498tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os12g23200Os.51583.1.S1_at11/1112+13112478..13114689Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
LOC_Os12g23210OsAffx.31843.1.S1_at11/1112+13117755..13118518hypothetical protein
LOC_Os12g23220NANA12+13127442..13130404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23230NANA12+13130721..13136810retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23240Os.47463.1.S1_x_at6/1112+13139236..13143924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g23240Os.14491.2.S1_x_at4/1112+13139236..13143924transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0019684biological_processphotosynthesis, light reaction
GO:0009538cellular_componentphotosystem I reaction center
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51583.1.S1_at--1136--571Chr12:13112919..13112943 (25 bp)
ATCCAGTCTGAGAAGGTCAGTAGAG
LOC_Os12g23200
Os.51583.1.S1_at--523--7111Chr12:13112934..13112958 (25 bp)
GTCAGTAGAGCTAGCTAGACTGCTA
LOC_Os12g23200
Os.51583.1.S1_at--118--4871Chr12:13112943..13112967 (25 bp)
GCTAGCTAGACTGCTAAAGAGCATT
LOC_Os12g23200
Os.51583.1.S1_at--903--51Chr12:13112965..13112989 (25 bp)
ATTGAGAGATTTCCCATTTCGCTTC
LOC_Os12g23200
Os.51583.1.S1_at--626--191Chr12:13112980..13113004 (25 bp)
ATTTCGCTTCATCAAAGCTAGTGTA
LOC_Os12g23200
Os.51583.1.S1_at--1012--391Chr12:13113045..13113069 (25 bp)
ATCAGATGGTAGATTTCAGACATAA
LOC_Os12g23200
Os.51583.1.S1_at--1111--5651Chr12:13113063..13113087 (25 bp)
GACATAATCGTTTTTCATTTTGTTG
LOC_Os12g23200
Os.51583.1.S1_at--1139--6851Chr12:13113087..13113111 (25 bp)
GTATTTTTATTGCTCTGTTCACTAG
LOC_Os12g23200
Os.51583.1.S1_at--203--4811Chr12:13113098..13113122 (25 bp)
GCTCTGTTCACTAGTTTATTTCCTC
LOC_Os12g23200
Os.51583.1.S1_at--1032--8991Chr12:13113140..13113164 (25 bp)
TGAATTGTTGTAATCCCTCTGTAGA
LOC_Os12g23200
Os.51583.1.S1_at--1122--531Chr12:13113152..13113176 (25 bp)
ATCCCTCTGTAGATTAGACGCATCG
LOC_Os12g23200
Target Sequence 
ATCCAGTCTGAGAAGGTCAGTAGAGCTAGCTAGACTGCTAAAGAGCATTGAGAGATTTCCCATTTCGCTTCATCAAAGCT
AGTGTAAAACTTGCATGTTTCTCAAGAACAAGCTCTGTTAATTAAAATCAGATGGTAGATTTCAGACATAATCGTTTTTC
ATTTTGTTGTATTTTTATTGCTCTGTTCACTAGTTTATTTCCTCAATTAGCAATATAATATTGAATTGTTGTAATCCCTC
TGTAGATTAGACGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis