Browse Element(s) Details


Os.51608.1.S1_at

Description gb:AK063168.1
DB_XREF= gi:32973186
TID=Os.51608.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B03, full insert sequence.
FL= gb:AK063168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4693011/11Pyridoxal-phosphate dependent enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46900OsAffx.14303.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.53858.1.S1_x_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900Os.14811.1.S1_at11/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46900OsAffx.14303.1.S1_x_at10/114+27576761..27596813Beige/BEACH domain containing protein, expressed
LOC_Os04g46910Os.23440.1.A1_at11/114+27600059..27601038Actin-depolymerizing factor, putative, expressed
LOC_Os04g46920NANA4+27601573..27604042Actin depolymerizing factor, putative, expressed
LOC_Os04g46930Os.51608.1.S1_at11/114+27604719..27607399Pyridoxal-phosphate dependent enzyme family protein, expressed
LOC_Os04g46940Os.23233.1.S1_at11/114+27610743..27616439Copper-transporting ATPase 3, putative, expressed
LOC_Os04g46950Os.56212.1.S1_at11/114+27617533..27618914expressed protein
LOC_Os04g46950Os.55390.1.S1_x_at1/114+27617533..27618914expressed protein
LOC_Os04g46960Os.11255.1.S1_at10/114+27619603..27621683phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os04g46970Os.53972.1.S1_at10/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46970Os.28139.1.S1_at1/114+27624161..27629237Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_x_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed
LOC_Os04g46980Os.46328.1.S1_at9/114+27629470..27631200Cis-zeatin O-glucosyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006566biological_processthreonine metabolism
GO:0009069biological_processserine family amino acid metabolism
GO:0004794molecular_functionthreonine ammonia-lyase activity
GO:0030378molecular_functionserine racemase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51608.1.S1_at--427--2491Chr04:27605509..27605533 (25 bp)
AACCCTTCAATACGTATTCTGGCAG
LOC_Os04g46930
Os.51608.1.S1_at--600--6291Chr04:27605467..27605491 (25 bp)
GATGATTCTGCCCAGTCCAAGGCTG
LOC_Os04g46930
Os.51608.1.S1_at--200--4331Chr04:27605409..27605433 (25 bp)
CCATTGCTGATGGACTTCGAGCTTT
LOC_Os04g46930
Os.51608.1.S1_at--640--10631Chr04:27605394..27605418 (25 bp)
TTCGAGCTTTTCTTGGTGACCTGAC
LOC_Os04g46930
Os.51608.1.S1_at--371--5591Chr04:27605106..27605130 (25 bp)
GACAATGCCATTGTGGACGCCATGA
LOC_Os04g46930
Os.51608.1.S1_at--666--4151Chr04:27605020..27605044 (25 bp)
CGCCCTCTCTGACGAGTTTAAGCAA
LOC_Os04g46930
Os.51608.1.S1_at--641--931Chr04:27604948..27604972 (25 bp)
AGGCAATGTTGACCTCGGTGTCCTC
LOC_Os04g46930
Os.51608.1.S1_at--774--7651Chr04:27604922..27604946 (25 bp)
GGGAGTCTCTCTATAAACGTTGATT
LOC_Os04g46930
Os.51608.1.S1_at--1053--11Chr04:27604900..27604924 (25 bp)
ATTGGACAGTCCAGTTTGTACCACT
LOC_Os04g46930
Os.51608.1.S1_at--50--4451Chr04:27604794..27604818 (25 bp)
GCCTTGGCTGCTGAATTACTCGATG
LOC_Os04g46930
Os.51608.1.S1_at--445--71Chr04:27604721..27604745 (25 bp)
ATTGCTGAACTGCTGGACATCTGGA
LOC_Os04g46930
Target Sequence 
AACCCTTCAATACGTATTCTGGCAGCAGAACCAAAGGGTGCTGATGATTCTGCCCAGTCCAAGGCTGCTGGAAAGATCAT
AACATTGCCTTCAACCAACACCATTGCTGATGGACTTCGAGCTTTTCTTGGTGACCTGACATGGCCGGTGGTGCGCGACT
TGGTGGATGATATCATTGTTGTGGATGACAATGCCATTGTGGACGCCATGAAAATGTGCTACGAGATGCTGAAGGTGGCT
GTTGAGCCGAGTGGAGCAATAGGCCTCGCAGCCGCCCTCTCTGACGAGTTTAAGCAAAGCTCTGCTTGGCATGAGAGCAG
TAAGATAGGGATCATTGTTTCTGGAGGCAATGTTGACCTCGGTGTCCTCTGGGAGTCTCTCTATAAACGTTGATTGGACA
GTCCAGTTTGTACCACTGATGAAATCTGTACCTGAATTTGAATAGACGGGGCTAGTAGCTGTAAAACCTGTAAATCCATT
GGTTCCTTACAGGAAATTGCCTTGGCTGCTGAATTACTCGATGCAGGAAATTGCATTGCCATTGACTTCAATACTTCAGT
CTAGAGTGCTGATTGCTGAACTGCTGGACATCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis