Browse Element(s) Details


Os.51616.1.S1_at

Description gb:AK066807.1
DB_XREF= gi:32976825
TID=Os.51616.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013079P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079P07, full insert sequence.
FL= gb:AK063186.1 gb:AK066807.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g166001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16570Os.15312.1.S1_at11/113+9111847..9115749zinc finger family protein, putative, expressed
LOC_Os03g16580Os.53016.1.S1_at10/113+9117602..9122615expressed protein
LOC_Os03g16580OsAffx.13881.1.S1_at2/113+9117602..9122615expressed protein
LOC_Os03g16600Os.51616.1.S1_at1/113+9136640..9136936expressed protein
LOC_Os03g16610Os.5638.1.S1_at11/113+9146670..9149377laccase, putative, expressed
LOC_Os03g16610OsAffx.21744.2.S1_x_at1/113+9146670..9149377laccase, putative, expressed
LOC_Os03g16620NANA3+9154572..9156326transposon protein, putative, Mutator sub-class
LOC_Os03g16630OsAffx.26598.2.S1_at2/113+9159994..9160812retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g16630OsAffx.26598.2.S1_x_at1/113+9159994..9160812retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51616.1.S1_at--406--631Chr03:9136645..9136669 (25 bp)
ATGCTCGTCTGCTGGAAGGACTGCT
LOC_Os03g16600
Os.51616.1.S1_at--1001--8391Chr03:9136566..9136590 (25 bp)
GGCCGGTACCGAAGATCTCTCGTCC
NONE
Os.51616.1.S1_at--224--2211Chr03:9136340..9136364 (25 bp)
ACAAGCTAGATGTGGTATTGTGCAC
NONE
Os.51616.1.S1_at--558--2211Chr03:9136317..9136341 (25 bp)
ACAAGTTTTGGGATCTCGTCCTCCT
NONE
Os.51616.1.S1_at--190--6411Chr03:9136279..9136303 (25 bp)
GATCTGGTAGTTGTTGAGGCTGCAA
NONE
Os.51616.1.S1_at--1148--5052Chr07:22811357..22811429 (24 bp)
GCAGCTTAGCTGGAGCGAAAATCTA
NONE
Os.51616.1.S1_at--382--7971Chr03:9136207..9136231 (25 bp)
GGATCTCCTACTATTGTACCACTAC
NONE
Os.51616.1.S1_at--660--6971Chr03:9136192..9136216 (25 bp)
GTACCACTACAAGGCCGAACAGTTG
NONE
Os.51616.1.S1_at--675--5491Chr03:9136176..9136200 (25 bp)
GAACAGTTGTCAGTCACTACCCGAT
NONE
Os.51616.1.S1_at--157--7011Chr03:9136164..9136188 (25 bp)
GTCACTACCCGATGTATAGCTAAAG
NONE
Os.51616.1.S1_at--282--5991Chr03:9136135..9136159 (25 bp)
GAGACGCAACAAGATACACACAACT
NONE
Target Sequence 
ATGCTCGTCTGCTGGAAGGACTGCTCGTAGCCGTGGCGTGGCCTCCCCCCTCCCTCCCTCCCTCTCGCCCCCCGCCGCCG
GCCGGTACCGAAGATCTCTCGTCCTCGCCGCCGCTCCTCCTCCAGAAGAATGAGACGTGGCATCGAGAAGATGGCCAATT
AGGTGAAGTATGTATAGATCAGAGAGTTTGATTATTAGGANCCCTTNCCTNCCTTTTTTTNCTCCCCTCTCCCANNAATN
CGTGGGGTGTTTCNTGATCATTGCNTACTGCTTGATTAGTTAGTGATTAGCAGAGTGTTTAGTACNTACAAGCTAGATGT
GGTATTGTGCACAAGTTTTGGGATCTCGTCCTCCTCAAAGGAGCTGGGGATCTGGTAGTTGTTGAGGCTGCAAAGGGGGG
AGCTGGGCGGTTAGCAGCTTAGCTGGAGCGAAAATCTAGTGGATCTCCTACTATTGTACCACTACAAGGCCGAACAGTTG
TCAGTCACTACCCGATGTATAGCTAAAGAAATGAGACGCAACAAGATACACACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis