Browse Element(s) Details


Os.51634.1.S1_at

Description gb:AK063226.1
DB_XREF= gi:32973244
TID=Os.51634.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51634 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-E11, full insert sequence.
FL= gb:AK063226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2177011/11expressed protein
LOC_Os09g084702/11retrotransposon protein, putative, unclassified, expressed
LOC_Os10g041402/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21720NANA1+12170431..12171824retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g21730OsAffx.20313.1.S1_x_at4/111+12180719..12181485hypothetical protein
LOC_Os01g21740OsAffx.2052.1.S1_at11/111+12186014..12186478hypothetical protein
LOC_Os01g21750NANA1+12188028..12188369hypothetical protein
LOC_Os01g21760OsAffx.10689.1.S1_at11/111+12192066..12193294hypothetical protein
LOC_Os01g21760OsAffx.31174.4.S1_x_at1/111+12192066..12193294hypothetical protein
LOC_Os01g21770Os.51634.1.S1_at11/111+12196716..12197133expressed protein
LOC_Os01g21780OsAffx.23331.3.S1_s_at11/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_at9/111+12202829..12206780hypothetical protein
LOC_Os01g21780OsAffx.23331.2.S1_x_at8/111+12202829..12206780hypothetical protein
LOC_Os01g21790NANA1+12207604..12208247hypothetical protein
LOC_Os01g21800NANA1+12213643..12214037hypothetical protein
LOC_Os01g21810OsAffx.23331.1.S1_s_at11/111+12215016..12217248hypothetical protein
LOC_Os01g21810Os.10381.1.S1_at1/111+12215016..12217248hypothetical protein
LOC_Os01g21820Os.27425.1.S1_at11/111+12217806..12230606Preprotein translocase secA subunit, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51634.1.S1_at--103--5951Chr01:12196848..12196872 (25 bp)
GAGCAGCGGTGATGTCTGTGATTTC
LOC_Os01g21770
Os.51634.1.S1_at--685--6271Chr01:12196858..12196882 (25 bp)
GATGTCTGTGATTTCTTTGATCTTT
LOC_Os01g21770
Os.51634.1.S1_at--808--9733Chr11:23776373..23776397 (25 bp)
TCAATGTTTGTTGTGTGATGTCTGT
NONE
Os.51634.1.S1_at--360--3896Chr09:11590858..11590880 (23 bp)
CTGTGATTGATGTTGGTTGATTCGG
NONE
Os.51634.1.S1_at--296--6571Chr01:12196925..12196949 (25 bp)
GATTCGGGAGTTCATAGTCTATAAT
LOC_Os01g21770
Os.51634.1.S1_at--80--10816Chr09:11590859..11590880 (22 bp)
TTGTGATTGATGTTGGTTGATTCGG
NONE
Os.51634.1.S1_at--297--6571Chr01:12196970..12196994 (25 bp)
GATTCGGGAGTTCATTATCTGTAAT
LOC_Os01g21770
Os.51634.1.S1_at--370--651Chr01:12197024..12197048 (25 bp)
ATGCAGGGTGGATGCACTCGATGCA
LOC_Os01g21770
Os.51634.1.S1_at--126--8331Chr01:12197051..12197075 (25 bp)
GGCTCGATTCGAGCCGGTATATCGA
LOC_Os01g21770
Os.51634.1.S1_at--1110--4191Chr01:12197064..12197088 (25 bp)
CCGGTATATCGAGCCCTTATTTTTG
LOC_Os01g21770
Os.51634.1.S1_at--1154--9391Chr01:12197093..12197117 (25 bp)
TCGTGAACGCCAGATTTGTTCCCGC
LOC_Os01g21770
Target Sequence 
GAGCAGCGGTGATGTCTGTGATTTCTTTGATCTTTATTTCAATGTTTGTTGTGTGATGTCTGTGATTGATGTTGGTTGAT
TCGGGAGTTCATAGTCTATAATTTTTGTGATTGATGTTGGTTGATTCGGGAGTTCATTATCTGTAATTGATGTTTTGGAT
TTGAGATTATGGGGCAATGCAGGGTGGATGCACTCGATGCATCGGCTCGATTCGAGCCGGTATATCGAGCCCTTATTTTT
GGGGCTCGTGAACGCCAGATTTGTTCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis