Browse Element(s) Details


Os.51648.1.S1_at

Description gb:AK063262.1
DB_XREF= gi:32973280
TID=Os.51648.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A08, full insert sequence.
FL= gb:AK063262.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2091011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20880OsAffx.12959.1.S1_at11/113+11798795..11802273Pyruvate kinase, cytosolic isozyme, putative
LOC_Os03g20890OsAffx.4986.1.S1_at2/113+11810150..11813676transposon protein, putative, Mutator sub-class
LOC_Os03g20900Os.51525.1.S1_at11/113+11817803..11820050transfactor, putative, expressed
LOC_Os03g20910Os.51648.2.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed
LOC_Os03g20910Os.51648.1.S1_at11/113+11824069..11827834Homeobox domain containing protein, expressed
LOC_Os03g20920OsAffx.12960.1.S1_at10/113+11848345..11849204hypothetical protein
LOC_Os03g20930OsAffx.8073.1.S1_at5/113+11850359..11855385retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0010075biological_processregulation of meristem size
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51648.1.S1_at--324--8591Chr03:11824624..11824647 (24 bp)
TGGTCGCTAGGCCACCTTAAAAACG
LOC_Os03g20910
Os.51648.1.S1_at--1--6071Chr03:11824600..11824624 (25 bp)
GAGTTCTCGATCTATCCTTGCAGTA
LOC_Os03g20910
Os.51648.1.S1_at--672--451Chr03:11824560..11824584 (25 bp)
ATCTCTACTCGATACTCATTGGATC
LOC_Os03g20910
Os.51648.1.S1_at--502--7711Chr03:11824517..11824541 (25 bp)
GGGTGCAGCTAGTTCTCAGTTAATC
LOC_Os03g20910
Os.51648.1.S1_at--1106--4931Chr03:11824376..11824400 (25 bp)
GCATTGCAGCATATCGATCGGCAAA
LOC_Os03g20910
Os.51648.1.S1_at--605--3951Chr03:11824295..11824319 (25 bp)
GCGGTCGAGTTTGTTGTCCTTAGAA
LOC_Os03g20910
Os.51648.1.S1_at--1124--6551Chr03:11824266..11824290 (25 bp)
GATTACAATATGGTCGCGTCTCTTC
LOC_Os03g20910
Os.51648.1.S1_at--50--7171Chr03:11824249..11824273 (25 bp)
GTCTCTTCTCATCATTTTCACAATT
LOC_Os03g20910
Os.51648.1.S1_at--1027--9151Chr03:11824197..11824221 (25 bp)
TGCCCTTGGCAGTCGAGCTATATAT
LOC_Os03g20910
Os.51648.1.S1_at--272--3691Chr03:11824106..11824130 (25 bp)
CTATATGTGTCAGCCAAACGCGCCT
LOC_Os03g20910
Os.51648.1.S1_at--486--3271Chr03:11824092..11824116 (25 bp)
CAAACGCGCCTGGAATGTTGGTGCT
LOC_Os03g20910
Target Sequence 
TGGTCGCTAGGCCACCTTAAAAACGAGTTCTCGATCTATCCTTGCAGTAGATAGTCAGATATATATCTCTACTCGATACT
CATTGGATCAGATGCATGAGCCGGCCGGGGTGCAGCTAGTTCTCAGTTAATCATCAATCAAGAATGCTGTCTTGGATTCA
AGACCTTGGAGTATGTCTAAATCGATCAATCGTCTATCGAGAACAAGACTATATATATTAGCTAGGTACGAGAAGCAAAT
TAATGCATGCATTGCAGCATATCGATCGGCAAAAGTACAACTACGTACTTATATATATGCCCCTTAATTAAAAACCTATG
AAAGCGTGGGCGGTCGAGTTTGTTGTCCTTAGAATACAGATTACAATATGGTCGCGTCTCTTCTCATCATTTTCACAATT
CCATTACAATATGCATGTATGCATGCCTGCCCTTGGCAGTCGAGCTATATATATTCTTTAATTTGTGCTAGCTATAGATG
CACGTTTGTATTGTTTTTTTTTACCGTGTGATGTAATGCTATATGTGTCAGCCAAACGCGCCTGGAATGTTGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis