Browse Element(s) Details


Os.51687.1.S1_at

Description gb:AK063396.1
DB_XREF= gi:32973414
TID=Os.51687.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-H09, full insert sequence.
FL= gb:AK063396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3240410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32360NANA4+19219502..19220035hypothetical protein
LOC_Os04g32370Os.21317.1.S1_at11/114+19224151..19231311hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os04g32380NANA4+19235840..19236400hypothetical protein
LOC_Os04g32390NANA4+19238249..19238782hypothetical protein
LOC_Os04g32404OsAffx.3978.1.S1_at11/114+19242651..19247947expressed protein
LOC_Os04g32404Os.51687.1.S1_at10/114+19242651..19247947expressed protein
LOC_Os04g32420OsAffx.26285.1.S1_at10/114+19253254..19254027hypothetical protein
LOC_Os04g32430OsAffx.14093.1.S1_at10/114+19255559..19257019expressed protein
LOC_Os04g32430OsAffx.10196.1.S1_x_at1/114+19255559..19257019expressed protein
LOC_Os04g32440OsAffx.26286.1.S1_at10/114+19261277..19264187hypothetical protein
LOC_Os04g32450OsAffx.14094.1.S1_at11/114+19266088..19267232hypothetical protein
LOC_Os04g32460Os.10149.2.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_x_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51687.1.S1_at--1057--9091Chr04:19247064..19247088 (25 bp)
TGCTCGAGCTCGAACGATCGCCATT
LOC_Os04g32404
Os.51687.1.S1_at--438--2591Chr04:19247052..19247076 (25 bp)
AACGATCGCCATTTCCGCTGGGCAG
LOC_Os04g32404
Os.51687.1.S1_at--1074--4011Chr04:19246999..19247023 (25 bp)
CGTTGGCCCTTCTAATTTCATGGCA
LOC_Os04g32404
Os.51687.1.S1_at--120--10331Chr04:19246984..19247008 (25 bp)
TTTCATGGCACATTCGATCAATTCC
LOC_Os04g32404
Os.51687.1.S1_at--559--1511Chr04:19246937..19246961 (25 bp)
AGCAGCACTCCTAGTAGTTAACCAC
LOC_Os04g32404
Os.51687.1.S1_at--348--10531Chr04:19246904..19246928 (25 bp)
TTCATCATCAGTGAGCGGTAATTAC
LOC_Os04g32404
Os.51687.1.S1_at--213--271Chr04:19246291..19246315 (25 bp)
ATATGTGCGGCACCTTCTATAACTG
LOC_Os04g32404
Os.51687.1.S1_at--787--8251Chr04:19246283..19246307 (25 bp)
GGCACCTTCTATAACTGGGCGGAAT
LOC_Os04g32404
Os.51687.1.S1_at--771--5811Chr04:19246252..19246276 (25 bp)
GACCCATAGGGAGGAGTATTTTACA
LOC_Os04g32404
Os.51687.1.S1_at--206--10271Chr04:19246207..19246231 (25 bp)
TTTGTTGCACAAATTACGCACAGGG
LOC_Os04g32404
Os.51687.1.S1_at--654--1011Chr04:19242651..19242675 (25 bp)
AGGTTTTGCACGAAGTTGCTACTCC
NONE
Target Sequence 
TGCTCGAGCTCGAACGATCGCCATTTCCGCTGGGCAGCCTGGGTTTGCCGCTCTCGCGGCGCTCGCGTTGGCCCTTCTAA
TTTCATGGCACATTCGATCAATTCCATTGCCATCCCTATAATAATTAAGCAGCACTCCTAGTAGTTAACCACGGTGAAAT
TTCATCATCAGTGAGCGGTAATTACAGTTACCAGACTCTGGTGAACTCGACAGGTAAATTCGCAGAGCGAAATAAGCTTG
GATCTGGTGGCTGTGGCACAGTCTACAAGAGAAAAAGTACTTCTCAAGATTTATATGTGCGGCACCTTCTATAACTGGGC
GGAATTGGATGGACCCATAGGGAGGAGTATTTTACAACGGATAACTTCAAGTTCTTTTTGTTGCACAAATTACGCACAGG
GGATATTGCATAACAATGAAGAAATAGCCGTGAAGAAACTCACCAGAAAAGATTTGAGAGAAGTGGAAAGGGAGGTTTCC
CTGGTGGCGCAGCTTCAGCACAAGACTACAGTAGTAATGTTCTTTGAAATACTTGGCTGTTACACCGTGCTCTTTGAAAT
CATTGAAGGTTTTGCACGAAGTTGCTACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis