Browse Element(s) Details


Os.51700.1.S1_at

Description gb:AK063458.1
DB_XREF= gi:32973476
TID=Os.51700.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G09, full insert sequence.
FL= gb:AK063458.1 gb:AK099370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1215011/11Glycosyl hydrolase family 9 protein, expressed
LOC_Os07g296301/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12090OsAffx.26845.1.S1_at11/115+6899083..6899367VQ motif family protein, expressed
LOC_Os05g12100OsAffx.26846.1.S1_at11/115+6902221..6902990expressed protein
LOC_Os05g12110OsAffx.26847.1.S1_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12110OsAffx.26847.1.S1_x_at11/115+6905080..6905547hypothetical protein
LOC_Os05g12120OsAffx.26848.1.S1_at11/115+6907031..6907465hypothetical protein
LOC_Os05g12130Os.52479.1.S1_at11/115+6913172..6915906pentatricopeptide, putative, expressed
LOC_Os05g12140Os.8464.1.A1_at11/115+6916203..6919012Leucine Rich Repeat family protein, expressed
LOC_Os05g12150Os.51700.1.S1_at11/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12150Os.32667.2.S1_x_at1/115+6921210..6923907Glycosyl hydrolase family 9 protein, expressed
LOC_Os05g12160OsAffx.4310.1.S1_at11/115+6928117..6928627hypothetical protein
LOC_Os05g12170Os.13459.1.S1_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os05g12170OsAffx.14653.1.S1_x_at11/115+6936703..6943504uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51700.1.S1_at--257--971Chr05:6921493..6921517 (25 bp)
AGGAGCCTCAGGTTCGTGTACGTGC
LOC_Os05g12150
Os.51700.1.S1_at--1051--9631Chr05:6921486..6921510 (25 bp)
TCAGGTTCGTGTACGTGCAGCCGGC
LOC_Os05g12150
Os.51700.1.S1_at--222--4171Chr05:6921456..6921480 (25 bp)
CGCCGGCGAACATCTGGGTCACCGG
LOC_Os05g12150
Os.51700.1.S1_at--61--4251Chr05:6921435..6921459 (25 bp)
CCGGCTACAAACTGGTCTGAAATGA
LOC_Os05g12150
Os.51700.1.S1_at--1141--3271Chr05:6921428..6921452 (25 bp)
CAAACTGGTCTGAAATGAACTCAAG
LOC_Os05g12150
Os.51700.1.S1_at--1022--5452Chr07:17421631..17421653 (22 bp)
GAACTCAAGTACTCAACTATTCTGA
LOC_Os07g29630
Os.51700.1.S1_at--532--7011Chr05:6921404..6921428 (25 bp)
GTACTCAACTATTCTGAAATGGTAA
LOC_Os05g12150
Os.51700.1.S1_at--456--6091Chr05:6921330..6921354 (25 bp)
GAGTCCAAGGAACGCGAGTACGTAT
LOC_Os05g12150
Os.51700.1.S1_at--169--6091Chr05:6921315..6921339 (25 bp)
GAGTACGTATACTCATCCTCTTCCT
LOC_Os05g12150
Os.51700.1.S1_at--473--6051Chr05:6921255..6921279 (25 bp)
GAGATTTAGTTGTTCATCGTCCTCC
LOC_Os05g12150
Os.51700.1.S1_at--16--9411Chr05:6921239..6921263 (25 bp)
TCGTCCTCCTTTTGCCCTATCAAGT
LOC_Os05g12150
Target Sequence 
AGGAGCCTCAGGTTCGTGTACGTGCAGCCGGCGCCGGCGCCGGCGAACATCTGGGTCACCGGCTACAAACTGGTCTGAAA
TGAACTCAAGTACTCAACTATTCTGAAATGGTAATTTGTGGTAGAGAGAGAGTAGAGTGTGGTTATTTGGAGGAAGTAGA
GAAGAGTCCAAGGAACGCGAGTACGTATACTCATCCTCTTCCTCCTCGAATACTATGATTTTAGGGGTTTGGAGAGATGA
GATTTAGTTGTTCATCGTCCTCCTTTTGCCCTATCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis