Browse Element(s) Details


Os.51744.1.A1_at

Description gb:AK063596.1
DB_XREF= gi:32973614
TID=Os.51744.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B05, full insert sequence.
FL= gb:AK063596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0169011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01650Os.53118.1.S1_at9/118+374960..377639Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01660Os.7391.1.S1_x_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01660Os.7391.1.S1_at11/118+377753..381899Mago nashi protein homolog, putative, expressed
LOC_Os08g01670Os.5834.1.S1_at11/118+383315..384849pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g01680Os.23940.1.A1_at11/118+388883..393753Chromatin assembly factor 1 subunit B, putative, expressed
LOC_Os08g01690Os.51744.1.A1_at11/118+393788..395077transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g01700OsAffx.5676.1.S1_at11/118+413088..413999Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51744.1.A1_at--326--1051Chr08:394353..394377 (25 bp)
AGGTGCACAACCTGAGTGGCCATGT
LOC_Os08g01690
Os.51744.1.A1_at--866--8051Chr08:394216..394240 (25 bp)
GGAGCAGGGAGCCATCATACCCCTT
LOC_Os08g01690
Os.51744.1.A1_at--561--311Chr08:394200..394224 (25 bp)
ATACCCCTTGGTCATGGCACAGGAG
LOC_Os08g01690
Os.51744.1.A1_at--257--2811Chr08:394078..394102 (25 bp)
AAGATCGAGATCCTTTCAGAAGATG
LOC_Os08g01690
Os.51744.1.A1_at--863--2331Chr08:394001..394025 (25 bp)
AAAGACTCGCATCACCAAGACCTGA
LOC_Os08g01690
Os.51744.1.A1_at--1105--9051Chr08:393965..393989 (25 bp)
TGCATGCCCAAGTGTTACTACAGCT
LOC_Os08g01690
Os.51744.1.A1_at--865--5551Chr08:393935..393959 (25 bp)
GAAAGCTACTTCAGCTGAGACGGTA
LOC_Os08g01690
Os.51744.1.A1_at--406--1611Chr08:393923..393947 (25 bp)
AGCTGAGACGGTAAAGTTATCCCTA
LOC_Os08g01690
Os.51744.1.A1_at--658--2831Chr08:393910..393934 (25 bp)
AAGTTATCCCTACACTTGTGTGATT
LOC_Os08g01690
Os.51744.1.A1_at--499--1151Chr08:393836..393860 (25 bp)
AGTCTCAGACCCCATTTGGTTGAAT
LOC_Os08g01690
Os.51744.1.A1_at--804--5571Chr08:393810..393834 (25 bp)
GAAAGTGTAACTATTGCTATCAGCA
LOC_Os08g01690
Target Sequence 
AGGTGCACAACCTGAGTGGCCATGTCCATGTCCACAAGGCGANTGAGTCAGGCCCCAGCGGCGCCAAGGCCACCGTGCTG
TCCATCNACGAGGNCCTCAAATTNCAGGAGGTCNCCGGCGAGTCGTNGAGCGCCGCCGGAGCAGGGAGCCATCATACCCC
TTGGTCATGGCACAGGAGGCAGCAGGAAGGCAAAGCAGAGAACAAGGCAGAGCTCATCAATGTNNCGGAGCNCATCCATG
TNGATGAGAAGATTGTATCNGGGCCTCAGGGGCAAAAGATCGAGATCCTTTCAGAAGATGAGGACATCAGGTTTGAAGAG
GAAGGCAGGAAGGAAAAGGGAGATCAAAGATCAAAGACTCGCATCACCAAGACCTGACAAGATGAGTNTGCATGCCCAAG
TGTTACTACAGCTNTAAAGAAAGCTACTTCAGCTGAGACGGTAAAGTTATCCCTACACTTGTGTGATTTGATTATTTTGA
TAAGATTGTATGTTNTTTGGTGTGAATGAAATAAGGGAGTCTCAGACCCCATTTGGTTGAATGGAAAGTGTAACTATTGC
TATCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51744.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis