Browse Element(s) Details


Os.51746.1.S1_s_at

Description gb:AK063599.1
DB_XREF= gi:32973617
TID=Os.51746.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B08, full insert sequence.
FL= gb:AK063599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5011011/11Oleosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50080Os.54644.1.S1_at9/115+28618961..28621222Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g50090OsAffx.15175.2.A1_at10/115+28622415..28625251oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51746.1.S1_s_at--129--8251Chr05:28634074..28634098 (25 bp)
GGCACGTGGATGTACCGCTACTTCA
LOC_Os05g50110
Os.51746.1.S1_s_at--144--3351Chr05:28634072..28634096 (25 bp)
CACGTGGATGTACCGCTACTTCACG
LOC_Os05g50110
Os.51746.1.S1_s_at--951--3391Chr05:28633866..28633890 (25 bp)
CAGCTTAGATGTGATCGTTCTTCTT
LOC_Os05g50110
Os.51746.1.S1_s_at--553--8831Chr05:28633855..28633879 (25 bp)
TGATCGTTCTTCTTCGGTGTGTTTG
LOC_Os05g50110
Os.51746.1.S1_s_at--839--3971Chr05:28633841..28633865 (25 bp)
CGGTGTGTTTGTGTTGTCGATTTCC
LOC_Os05g50110
Os.51746.1.S1_s_at--717--7431Chr05:28633837..28633861 (25 bp)
GTGTTTGTGTTGTCGATTTCCTCAC
LOC_Os05g50110
Os.51746.1.S1_s_at--1029--8671Chr05:28633832..28633856 (25 bp)
TGTGTTGTCGATTTCCTCACTTCTT
LOC_Os05g50110
Os.51746.1.S1_s_at--1130--8711Chr05:28633827..28633851 (25 bp)
TGTCGATTTCCTCACTTCTTCTGTA
LOC_Os05g50110
Os.51746.1.S1_s_at--864--191Chr05:28633822..28633846 (25 bp)
ATTTCCTCACTTCTTCTGTAGGCTA
LOC_Os05g50110
Os.51746.1.S1_s_at--914--3731Chr05:28633817..28633841 (25 bp)
CTCACTTCTTCTGTAGGCTACTTTA
LOC_Os05g50110
Os.51746.1.S1_s_at--905--3871Chr05:28633807..28633831 (25 bp)
CTGTAGGCTACTTTAATTTGGTATT
LOC_Os05g50110
Target Sequence 
GGCACGTGGATGTACCGCTACTTCACGGGGAGGCACCCCGTCGGCGCCGACCGGGTGGACTACGCGCGCAGCCGGATCGC
CGACACGGCTAGCCACGTCAAGGACTACGCGCGCGAGTACGGCGGCTACCTGCATAGCCGGGCCAAGGATGCCGCGCCCG
GCGCGTAAGCCGCCCGCGCGCGCCACATGTGTGTCGGTGTGTGGCATGCAGCTTAGATGTGATCGTTCTTCTTCGGTGTG
TTTGTGTTGTCGATTTCCTCACTTCTTCTGTAGGCTACTTTAATTTGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51746.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis