Browse Element(s) Details


OsAffx.15175.2.A1_at

Description tigr:9633.m04710
TID=OsAffx.15175.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 38288-39393
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5009010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g182346/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50030NANA5+28598837..28600840expressed protein
LOC_Os05g50040Os.10827.1.S1_x_at11/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50040Os.46055.2.S1_x_at6/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50050NANA5+28606283..28606852hypothetical protein
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50080Os.54644.1.S1_at9/115+28618961..28621222Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g50090OsAffx.15175.2.A1_at10/115+28622415..28625251oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein

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Gene Ontology Classification
GO idTypeName
GO:0019761biological_processglucosinolate biosynthesis
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15175.2.A1_at--1107--7532Chr10:8933959..8933983 (25 bp)
GTGGCTCCAAGTCTGGGTCCCCGCA
LOC_Os10g18234
OsAffx.15175.2.A1_at--1062--9572Chr10:8933906..8933930 (25 bp)
TCATTGTCCTCCATCGTCAATTGCA
LOC_Os10g18234
OsAffx.15175.2.A1_at--423--512Chr10:8933894..8933918 (25 bp)
ATCGTCAATTGCAGCGCTGCCCTTC
LOC_Os10g18234
OsAffx.15175.2.A1_at--279--4772Chr10:8933884..8933903 (20 bp)
GCTGCCCTTCCGTCGTGGTCATCAG
LOC_Os10g18234
OsAffx.15175.2.A1_at--521--7191Chr05:28624045..28624069 (25 bp)
GTCGTGGTCATCAGCTGCCGCTCAT
LOC_Os05g50090
OsAffx.15175.2.A1_at--1161--1712Chr10:8933829..8933853 (25 bp)
ACCAGATCTGGTAGCATGCCTCGAC
LOC_Os10g18234
OsAffx.15175.2.A1_at--309--492Chr10:8933824..8933848 (25 bp)
ATCTGGTAGCATGCCTCGACGGTGA
LOC_Os10g18234
OsAffx.15175.2.A1_at--794--1631Chr05:28623972..28623996 (25 bp)
AGCGGTGGTCGTTGTCATCGCGCCC
LOC_Os05g50090
OsAffx.15175.2.A1_at--776--4711Chr05:28623537..28623968 (25 bp)
GCTGGCGAGAGCACGTGGACACCAA
LOC_Os05g50090
OsAffx.15175.2.A1_at--973--5991NONE
GAGAGCACGTGGACACCAACTGGCT
NONE
OsAffx.15175.2.A1_at--61--7531Chr05:28623523..28623545 (23 bp)
GTGGACACCAACTGGCTCAGCATCG
LOC_Os05g50090
Target Sequence 
GTGGCTCCAAGTCTGGGTCCCCGCATCACCAGCTACTACCGCTCGCCGCCGTCTCATTGTCCTCCATCGTCAATTGCAGC
GCTGCCCTTCCGTCGTGGTCATCAGCTGCCGCTCATCCTCACCCGCCAGCACCAGATCTGGTAGCATGCCTCGACGGTGA
TGGCAGCGGTGGTCGTTGTCATCGCGCCCGCGGCTGGCGAGAGCACGTGGACACCAACTGGCTCAGCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15175.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis