Browse Element(s) Details


Os.55591.1.S1_at

Description gb:AK108377.1
DB_XREF= gi:32993586
TID=Os.55591.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55591 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-E02, full insert sequence.
FL= gb:AK108377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5011011/11Oleosin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50080Os.54644.1.S1_at9/115+28618961..28621222Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g50090OsAffx.15175.2.A1_at10/115+28622415..28625251oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative
LOC_Os05g50150NANA5+28656100..28656375hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019915biological_processsequestering of lipid
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55591.1.S1_at--528--9491Chr05:28633676..28633700 (25 bp)
TCTCGCAATGGTCGATCGCAATTCC
LOC_Os05g50110
Os.55591.1.S1_at--419--7891Chr05:28633640..28633664 (25 bp)
GGTTACGCTCAATGACGACTCTTTG
LOC_Os05g50110
Os.55591.1.S1_at--186--10291Chr05:28633619..28633643 (25 bp)
TTTGCGTGTGAGATGTGACCTAGCT
LOC_Os05g50110
Os.55591.1.S1_at--870--5371Chr05:28633548..28633572 (25 bp)
GAAGCAAACGGCACAGCATTAAACA
LOC_Os05g50110
Os.55591.1.S1_at--88--8391Chr05:28633456..28633480 (25 bp)
GGCGAGCGGCGCCACAAACCAAATT
LOC_Os05g50110
Os.55591.1.S1_at--878--2351Chr05:28633441..28633465 (25 bp)
AAACCAAATTCTGCCTCACCAAATG
LOC_Os05g50110
Os.55591.1.S1_at--782--8891Chr05:28633413..28633437 (25 bp)
TGAGATCAGCGTGCAACGGCGCAAC
LOC_Os05g50110
Os.55591.1.S1_at--217--2651Chr05:28633391..28633415 (25 bp)
AACCAGTTCCGTGCAACAGTCGAAG
LOC_Os05g50110
Os.55591.1.S1_at--128--9071Chr05:28633365..28633389 (25 bp)
TGCATTCAGAGATCAGTGCGCCCAC
LOC_Os05g50110
Os.55591.1.S1_at--550--1231Chr05:28633339..28633363 (25 bp)
AGTTCCAGTCGAGCAGAGGGCATCC
LOC_Os05g50110
Os.55591.1.S1_at--671--531Chr05:28633289..28633313 (25 bp)
ATCGCATCACGAACCGCCGTGAAGA
LOC_Os05g50110
Target Sequence 
TCTCGCAATGGTCGATCGCAATTCCTCCCAGCTCGAGGTTACGCTCAATGACGACTCTTTGCGTGTGAGATGTGACCTAG
CTAGAAAAGTCCAAAATTTTATCGTTTTCGCAAAGCAAAAGATGTGAAGAAGCAAACGGCACAGCATTAAACAAGCAAGA
AGTTAACCAAACAATCTGAATTGGAAGCGGTTTTGATATGTTTTTTCAGTTGGGACTGGAGGCGAGCGGCGCCACAAACC
AAATTCTGCCTCACCAAATGAGCTGAGATCAGCGTGCAACGGCGCAACCAGTTCCGTGCAACAGTCGAAGATGCATTCAG
AGATCAGTGCGCCCACCAGTTCCAGTCGAGCAGAGGGCATCCGCCATGCCGGCAACAACACCGAACCATCGCATCACGAA
CCGCCGTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55591.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis