Browse Element(s) Details


Os.55247.1.S1_at

Description gb:AK107732.1
DB_XREF= gi:32992941
TID=Os.55247.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-F10, full insert sequence.
FL= gb:AK107732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5010010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50040Os.10827.1.S1_x_at11/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50040Os.46055.2.S1_x_at6/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50050NANA5+28606283..28606852hypothetical protein
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50080Os.54644.1.S1_at9/115+28618961..28621222Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g50090OsAffx.15175.2.A1_at10/115+28622415..28625251oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g50100Os.55247.1.S1_at10/115+28627048..28627954expressed protein
LOC_Os05g50110Os.55591.1.S1_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50110Os.51746.1.S1_s_at11/115+28633222..28634507Oleosin family protein, expressed
LOC_Os05g50120Os.34647.1.S1_at11/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50120Os.34984.3.S1_x_at1/115+28637740..28643250Protein kinase domain containing protein, expressed
LOC_Os05g50130OsAffx.15176.1.S1_at10/115+28648050..28650974Homeobox associated leucine zipper family protein
LOC_Os05g50140OsAffx.27390.1.S1_at11/115+28652106..28654544Auxin efflux carrier component 3, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55247.1.S1_at--1091--1571Chr05:28627449..28627473 (25 bp)
AGCTCACCGACTTCGAGCAGAGGCT
LOC_Os05g50100
Os.55247.1.S1_at--505--6051Chr05:28627417..28627441 (25 bp)
GAGATATACAAGTCCATCGTCGCCT
LOC_Os05g50100
Os.55247.1.S1_at--175--4351Chr05:28627317..28627341 (25 bp)
CCAGTGGCCAGCTGCTAGTCAATTA
LOC_Os05g50100
Os.55247.1.S1_at--94--3191Chr05:28627298..28627322 (25 bp)
CAATTAGCGTGCTGTCTGTATCCAC
LOC_Os05g50100
Os.55247.1.S1_at--249--3511NONE
CATGGGAACTGAACCGCGAGAGCTC
NONE
Os.55247.1.S1_at--427--6011Chr05:28627250..28627274 (25 bp)
GAGAGCTCCTGCAAGTTCGTTTGCT
LOC_Os05g50100
Os.55247.1.S1_at--582--3791Chr05:28627227..28627251 (25 bp)
CTCGATCGCTGCTCATGTTGATGAT
LOC_Os05g50100
Os.55247.1.S1_at--153--1991Chr05:28627195..28627219 (25 bp)
ACTGCTGTTTCTTCCTTGTAATTTG
LOC_Os05g50100
Os.55247.1.S1_at--2--3671Chr05:28627134..28627158 (25 bp)
CTTCAATTTCTACCTGGTGCAAATC
LOC_Os05g50100
Os.55247.1.S1_at--127--611Chr05:28627106..28627130 (25 bp)
ATGCCGCCGCGAGTATGTTTAATTT
LOC_Os05g50100
Os.55247.1.S1_at--545--6451Chr05:28627066..28627090 (25 bp)
GATCAAGCAAAGTTCGTGCCTCCGC
LOC_Os05g50100
Target Sequence 
AGCTCACCGACTTCGAGCAGAGGCTCGTCGTCGAGATATACAAGTCCATCGTCGCCTCCAAGGAGCTCACCACCATGCTC
CACCACTCCACCGCGCACCTGCCGCAGCAGCACAACACGGCGGCGCCGGCGTCCAGTGGCCAGCTGCTAGTCAATTAGCG
TGCTGTCTGTATCCACCATCGACATGGGAACTGAACCGCGAGAGCTCCTGCAAGTTCGTTTGCTCGATCGCTGCTCATGT
TGATGATTATTACTACTGCTGTTTCTTCCTTGTAATTTGTAAGAAGTATTAGTTAGGACAAGATGATGATGTACACTTCA
ATTTCTACCTGGTGCAAATCACCATGCCGCCGCGAGTATGTTTAATTTCGTAACCAAGAAATCGATCAAGCAAAGTTCGT
GCCTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis