Browse Element(s) Details


Os.51754.1.S1_at

Description gb:AK063612.1
DB_XREF= gi:32973630
TID=Os.51754.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D05, full insert sequence.
FL= gb:AK063612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g113001/11hypothetical protein
LOC_Os09g391701/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11250Os.24787.1.S1_at8/119+6245257..6248737co-chaperone GrpE family protein, expressed
LOC_Os09g11260OsAffx.29802.1.S1_at10/119+6249839..6250492hypothetical protein
LOC_Os09g11270Os.11452.1.S1_at11/119+6250864..6259438enhancer of polycomb, putative, expressed
LOC_Os09g11280OsAffx.17642.1.S1_at8/119+6261724..6262591hypothetical protein
LOC_Os09g11290OsAffx.17643.1.S1_x_at11/119+6265198..6265539Indole-3-acetate beta-glucosyltransferase, putative
LOC_Os09g11300OsAffx.6233.1.S1_at8/119+6270930..6273949hypothetical protein
LOC_Os09g11300OsAffx.30202.1.S1_x_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11300Os.51754.1.S1_at1/119+6270930..6273949hypothetical protein
LOC_Os09g11310OsAffx.6234.1.S1_at11/119+6275651..6276322hypothetical protein
LOC_Os09g11320OsAffx.29803.1.S1_at10/119+6284004..6288486hypothetical protein
LOC_Os09g11320Os.57362.1.S1_at1/119+6284004..6288486hypothetical protein
LOC_Os09g11330NANA9+6293425..6294952hypothetical protein
LOC_Os09g11339NANA9+6295478..6295656NA

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51754.1.S1_at--743--10232Chr10:20746999..20747019 (21 bp)
TATTGTGCACATGCTCTTATCCTCA
NONE
Os.51754.1.S1_at--263--7893Chr07:23692139..23692161 (23 bp)
GGTTACTGCCAAACTGAGATCAACT
NONE
Os.51754.1.S1_at--180--5311Chr03:22670614..22670638 (25 bp)
GAAGTCCACCTAATCAGATGGGCAG
NONE
Os.51754.1.S1_at--788--5011Chr03:22670593..22670617 (25 bp)
GCAGGGTTGGCTTGGTTCAATTTAA
NONE
Os.51754.1.S1_at--406--10852Chr07:23692035..23692101 (25 bp)
TTGGTTCAATTTACGAGCAGCATCA
NONE
Os.51754.1.S1_at--95--5592Chr07:23692005..23692025 (21 bp)
GAAATACTGACATACTCGACTGCAA
NONE
Os.51754.1.S1_at--663--3091Chr03:22670398..22670422 (25 bp)
AATAGCACTACTACGGATCCGGGCT
NONE
Os.51754.1.S1_at--743--1911Chr03:22670353..22670377 (25 bp)
ACGGGCCAACACAACTCGTCAAAGA
NONE
Os.51754.1.S1_at--1095--89119Chr12:6231817..6231841 (25 bp)
TGACGGGCCGAAAAAATATCCTCTT
NONE
Os.51754.1.S1_at--345--10191Chr03:22670289..22670313 (25 bp)
TATATTGCTACTAGGGAGGACCCAT
NONE
Os.51754.1.S1_at--1022--3131Chr03:22670242..22670266 (25 bp)
AATTAGCTCTTCAACAGAACCTGTT
NONE
Target Sequence 
TATTGTGCACATGCTCTTATCCTCACTCTAAGTACTTTTTACAACATTTTCTGGTTTATTTGGTTACTGCCAAACTGAGA
TCAACTGATACATCTATTCCAGCAGATGAGAAGTCCACCTAATCAGATGGGCAGGGTTGGCTTGGTTCAATTTAAGAAAT
CTGAATTTGGCAAATTTAAGAAATTGGTTCAATTTACGAGCAGCATCATATTAGAAATACTGACATACTCGACTGCAAAA
CTATTTTCAAGACTAAACTGAATTGGAGATTGATGTTCCCAAGTACTGTGATAAGAATTGAGATAGTGTGAAGTGCAGGA
AACCAAATAGCACTACTACGGATCCGGGCTTCAGTGACGGGTCATCTGTGACGGGCCAACACAACTCGTCAAAGATGAGT
CATCTCTGACGGGCCGAAAAAATATCCTCTTCAATATATTGCTACTAGGGAGGACCCATCACAGATGTATCGTTTACTAA
TAATTAGCTCTTCAACAGAACCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis