Browse Element(s) Details


Os.51760.2.S1_at

Description gb:AK064735.1
DB_XREF= gi:32974753
TID=Os.51760.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C07, full insert sequence.
FL= gb:AK064735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4673010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46674NANA3+26367389..26368943transposon protein, putative, unclassified
LOC_Os03g46690OsAffx.3534.1.S1_at11/113+26374411..26376763F-box domain containing protein
LOC_Os03g46710Os.50529.1.S1_x_at11/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46710OsAffx.25584.1.S1_at8/113+26382594..26387978FYVE zinc finger family protein, expressed
LOC_Os03g46720OsAffx.25585.1.S1_at11/113+26389883..26391746F-box domain containing protein
LOC_Os03g46730Os.51760.1.S1_at11/113+26391945..26393507expressed protein
LOC_Os03g46730Os.51760.2.S1_at10/113+26391945..26393507expressed protein
LOC_Os03g46740Os.34369.1.S1_at11/113+26394467..26397972ABC transporter family protein, expressed
LOC_Os03g46750Os.16285.1.S1_a_at11/113+26398078..26400679mannosyltransferase family protein, putative, expressed
LOC_Os03g46760NANA3+26401404..26402936hypothetical protein
LOC_Os03g46770Os.46231.2.S1_x_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46231.1.S1_a_at11/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46770Os.46902.1.S1_x_at1/113+26409256..26410378retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g46780OsAffx.25586.1.S1_at11/113+26411457..26413586hypothetical protein
LOC_Os03g46790OsAffx.3535.1.S1_at11/113+26415393..26416399Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51760.2.S1_at--937--5071Chr03:26393270..26393290 (21 bp)
GCACGTGGGCCCAAGGATTTTACTT
LOC_Os03g46730
Os.51760.2.S1_at--195--6551Chr03:26393281..26393305 (25 bp)
GATTTTACTTGCAAGCAAGCACTCG
LOC_Os03g46730
Os.51760.2.S1_at--884--4791Chr03:26393311..26393335 (25 bp)
GCTCCCTCACTGGATACAAGCTGAT
LOC_Os03g46730
Os.51760.2.S1_at--1017--4731Chr03:26393330..26393354 (25 bp)
GCTGATTATTTCTAGCAGTTTTTAT
LOC_Os03g46730
Os.51760.2.S1_at--309--8531Chr03:26393372..26393396 (25 bp)
TGGTTTAATACCAGCCTTCGATTGT
LOC_Os03g46730
Os.51760.2.S1_at--1024--1711Chr03:26393381..26393405 (25 bp)
ACCAGCCTTCGATTGTTGGCACGGG
LOC_Os03g46730
Os.51760.2.S1_at--611--8271NONE
GGCATCCATCTAGGAACCCTGTCAA
NONE
Os.51760.2.S1_at--321--10091Chr03:26393415..26393439 (25 bp)
TAGGAACCCTGTCAAGACTAAATGA
LOC_Os03g46730
Os.51760.2.S1_at--514--5711Chr03:26393430..26393454 (25 bp)
GACTAAATGAAAATGAGCACCAGGA
LOC_Os03g46730
Os.51760.2.S1_at--431--8911Chr03:26393443..26393467 (25 bp)
TGAGCACCAGGAAGCAGTGGTTTAT
LOC_Os03g46730
Os.51760.2.S1_at--339--7511Chr03:26393459..26393483 (25 bp)
GTGGTTTATGCATGAATTTCTGTCT
LOC_Os03g46730
Target Sequence 
GCACGTGGGCCCAAGGATTTTACTTGCAAGCAAGCACTCGACACCGCTCCCTCACTGGATACAAGCTGATTATTTCTAGC
AGTTTTTATTTGATTATGGGAGGGGCTGGTTTAATACCAGCCTTCGATTGTTGGCACGGGGCATCCATCTAGGAACCCTG
TCAAGACTAAATGAAAATGAGCACCAGGAAGCAGTGGTTTATGCATGAATTTCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51760.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis