Browse Element(s) Details


Os.51763.1.S1_x_at

Description gb:AK063653.1
DB_XREF= gi:32973671
TID=Os.51763.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B04, full insert sequence.
FL= gb:AK063653.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1269011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os09g361601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12670Os.6090.2.S1_at11/111+6976418..6982522expressed protein
LOC_Os01g12670Os.6090.1.S1_a_at10/111+6976418..6982522expressed protein
LOC_Os01g12680Os.5608.2.S1_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12680Os.5608.3.S1_x_at11/111+6984703..6990808C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os01g12690Os.51763.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12690Os.7995.1.S1_x_at11/111+7005853..7007292uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g12700OsAffx.15054.1.S1_x_at5/111+7011933..7015181Myb-like DNA-binding domain containing protein
LOC_Os01g12710Os.18818.1.S1_a_at11/111+7021099..7027411oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0048479biological_processstyle development
GO:0048480biological_processstigma development
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005856cellular_componentcytoskeleton
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51763.1.S1_x_at--720--4091Chr01:7006738..7006762 (25 bp)
CGACGAGGCACCAGATAAGGCGCAA
LOC_Os01g12690
Os.51763.1.S1_x_at--367--4231Chr01:7006897..7006921 (25 bp)
CCGACTTCCGGTCGTCCATGGTGGA
LOC_Os01g12690
Os.51763.1.S1_x_at--15--5671Chr01:7007034..7007058 (25 bp)
GACATCTGGGTCGTCCTCCATGGCG
LOC_Os01g12690
Os.51763.1.S1_x_at--490--9233Chr09:14774268..14774292 (24 bp)
TCCATGGCGGCTAGCTACTAGCTAG
NONE
Os.51763.1.S1_x_at--433--4851Chr01:7007063..7007087 (25 bp)
GCTACTAGCTAGCTTATTAGCCTTA
LOC_Os01g12690
Os.51763.1.S1_x_at--526--3131Chr01:7007118..7007142 (25 bp)
AATTAATTAGCTCAGTCCCAGGATG
LOC_Os01g12690
Os.51763.1.S1_x_at--955--3071Chr01:7007146..7007170 (25 bp)
AATCACTGAGATTAGCCAGAGTACT
LOC_Os01g12690
Os.51763.1.S1_x_at--92--3431Chr01:7007162..7007186 (25 bp)
CAGAGTACTACTCCATCTTGCAGTA
LOC_Os01g12690
Os.51763.1.S1_x_at--787--431Chr01:7007176..7007200 (25 bp)
ATCTTGCAGTAATCATGTGTGTTCA
LOC_Os01g12690
Os.51763.1.S1_x_at--573--7411Chr01:7007194..7007218 (25 bp)
GTGTTCATTACTTAATCTTTCTCAG
LOC_Os01g12690
Os.51763.1.S1_x_at--551--6812Chr01:7007220..7007244 (25 bp)
GTTTAATTAATCTCCTCTTGTGTTG
LOC_Os01g12690
Target Sequence 
CGACGAGGCACCAGATAAGGCGCAAGCGCCGCGCGGCGAGGGCGAGCAGCTGCGTTGACACGTGNGGCGTCAGGGACGGG
TTCCGCCCCGTGGTGTCGGCGGCGGAGGAGCAGGTCCGGCGCGGGTTCGCCGTGGTGAAGCGGTCGCGGGACCCGTACGC
CGACTTCCGGTCGTCCATGGTGGAGATGGTCGTCGGGCGGCAGCTGTTCGGCGCGGCGGAGCTGGAGCGGCTGCTCCGGT
CGTACCTCTCCCTGAACGCGCCGCGCCACCACCCCGTCATCCTCCAGGCCTTCTCCGACATCTGGGTCGTCCTCCATGGC
GGCTAGCTACTAGCTAGCTTATTAGCCTTAATAAAAAGAGAGAAAAAAATCACCGTGTTTAATTAATTAGCTCAGTCCCA
GGATGATTAATCACTGAGATTAGCCAGAGTACTACTCCATCTTGCAGTAATCATGTGTGTTCATTACTTAATCTTTCTCA
GAGTTTAATTAATCTCCTCTTGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51763.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis