Browse Element(s) Details


Os.51779.1.S1_at

Description gb:AK063690.1
DB_XREF= gi:32973708
TID=Os.51779.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F08, full insert sequence.
FL= gb:AK063690.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0417010/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51779.1.S1_at--1004--9471NONE
TCTGAGTCTCTCAGGGAGCACGACT
NONE
Os.51779.1.S1_at--151--5951Chr08:2015115..2015139 (25 bp)
GAGCACGACTTGAGGGATACGACTT
LOC_Os08g04170
Os.51779.1.S1_at--289--6491Chr08:2015130..2015154 (25 bp)
GATACGACTTTGACTTGGCACCAGA
LOC_Os08g04170
Os.51779.1.S1_at--1054--2051Chr08:2015142..2015166 (25 bp)
ACTTGGCACCAGAGGACGCATTGGA
LOC_Os08g04170
Os.51779.1.S1_at--404--4931Chr08:2015189..2015213 (25 bp)
GCTTGGCAGGCCTGGTTTATCGAGC
LOC_Os08g04170
Os.51779.1.S1_at--929--6811Chr08:2015203..2015227 (25 bp)
GTTTATCGAGCCCATTGAGTGAAAA
LOC_Os08g04170
Os.51779.1.S1_at--331--1011Chr08:2015238..2015262 (25 bp)
AGGATTGTCGGGTCCATTGGGCACA
LOC_Os08g04170
Os.51779.1.S1_at--741--7791Chr08:2015248..2015272 (25 bp)
GGTCCATTGGGCACAGCAAGTAGTA
LOC_Os08g04170
Os.51779.1.S1_at--916--5651Chr08:2015333..2015357 (25 bp)
GACAGTCACGACTATCCTTGGAAGA
LOC_Os08g04170
Os.51779.1.S1_at--999--6251Chr08:2015356..2015380 (25 bp)
GATGGGCAATCGACTTTACTGACTA
LOC_Os08g04170
Os.51779.1.S1_at--557--2091Chr08:2015386..2015410 (25 bp)
ACATCTATTCTAATATTCCACAGGA
LOC_Os08g04170
Target Sequence 
TCTGAGTCTCTCAGGGAGCACGACTTGAGGGATACGACTTTGACTTGGCACCAGAGGACGCATTGGAGCAAGGGCAGCTA
CAGGGTGCCGCTTGGCAGGCCTGGTTTATCGAGCCCATTGAGTGAAAAGGGGGATGAGAGGATTGTCGGGTCCATTGGGC
ACAGCAAGTAGTAGCAGACTAGCAGTAGAAGTAACTGGTATATATAGTAATAACAGTCTGAAGTCAACTAAATGACAGTC
ACGACTATCCTTGGAAGATGGGCAATCGACTTTACTGACTAAAAAAACATCTATTCTAATATTCCACAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis