Browse Element(s) Details


Os.51787.1.S1_at

Description gb:AK063710.1
DB_XREF= gi:32973728
TID=Os.51787.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-B10, full insert sequence.
FL= gb:AK063710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2432011/11Cell Division Protein AAA ATPase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24290NANA12+13852652..13854807retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24300OsAffx.18568.1.S1_at1/1112+13857953..13860736retrotransposon protein, putative, unclassified
LOC_Os12g24310OsAffx.19798.1.S1_at11/1112+13872519..13873557hypothetical protein
LOC_Os12g24320Os.51787.1.S1_at11/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320Os.48426.1.A1_at5/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.25760.1.S1_x_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.31219.1.S1_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24330Os.57108.1.S1_at11/1112+13882818..13885562expressed protein
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51787.1.S1_at--851--5051Chr12:13877786..13877810 (25 bp)
GCAGCACGAGCTGCTAGGCGACATA
LOC_Os12g24320
Os.51787.1.S1_at--949--9071Chr12:13877797..13877821 (25 bp)
TGCTAGGCGACATACGGCGGCTGCT
LOC_Os12g24320
Os.51787.1.S1_at--302--2631Chr12:13877859..13877883 (25 bp)
AACCTGATGCCCATGTCCAAGAGGA
LOC_Os12g24320
Os.51787.1.S1_at--271--1031Chr12:13877912..13877936 (25 bp)
AGGTCTAGTCGAGGCGCTGAACATG
LOC_Os12g24320
Os.51787.1.S1_at--78--1111Chr12:13878608..13878632 (25 bp)
AGTGGGATCATATCGGGCAGCTGCA
LOC_Os12g24320
Os.51787.1.S1_at--236--9051Chr12:13878629..13878653 (25 bp)
TGCAGATCCCTGGAGTTGCAAGCCA
LOC_Os12g24320
Os.51787.1.S1_at--1023--5151Chr12:13878646..13878670 (25 bp)
GCAAGCCATGTATCCTAGCAGAGTG
LOC_Os12g24320
Os.51787.1.S1_at--1038--5031Chr12:13878663..13878687 (25 bp)
GCAGAGTGCTCATGAAGATTTTCAA
LOC_Os12g24320
Os.51787.1.S1_at--656--2471Chr12:13878703..13878727 (25 bp)
AACAGTTTGCTAATAGGGCCTGCGA
LOC_Os12g24320
Os.51787.1.S1_at--481--1091Chr12:13878717..13878741 (25 bp)
AGGGCCTGCGAAATTGTTAGCATTT
LOC_Os12g24320
Os.51787.1.S1_at--751--8331Chr12:13878756..13878780 (25 bp)
GGCTGATAGTTGCTTGTATTTTGTA
LOC_Os12g24320
Target Sequence 
GCAGCACGAGCTGCTAGGCGACATACGGCGGCTGCTCGAGGAGGCCGACATGTCGCCGGCGGACGTCGCCGAGAACCTGA
TGCCCATGTCCAAGAGGAAGAAGAGGGACCCTGACGCGTGCCTGGCAGGTCTAGTCGAGGCGCTGAACATGGCCAAGGAG
GAAGCACAAGCAAACAAGGCGGCGAAAGAGGACGAGGAGGCAAAGGCAGCGAAAGGGATAGAAGAGATGAAAACCANAGA
GCAGGCAACGACCAACGGTGAAGACGAAGGGAAGGACAAAAGGACATCGGAAGAGAACAAGGCCAACGGCGACATATAGA
TATTACTAGCAAGTGGGATCATATCGGGCAGCTGCAGATCCCTGGAGTTGCAAGCCATGTATCCTAGCAGAGTGCTCATG
AAGATTTTCAACCTTTATTTTTACATAACAGTTTGCTAATAGGGCCTGCGAAATTGTTAGCATTTCCGTATTATATTAAG
GCTGATAGTTGCTTGTATTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis