Browse Element(s) Details

Os.51795.1.S1_at

Description

gb:AK063734.1
DB_XREF= gi:32973752
TID=Os.51795.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E11, full insert sequence.
FL= gb:AK063734.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02380	11/11	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02360	Os.44828.1.A1_at	11/11	6	+	785864..786614	Skp1 family, dimerisation domain containing protein, expressed
LOC_Os06g02370	Os.4506.3.S1_x_at	11/11	6	+	795317..799813	expressed protein
LOC_Os06g02380	Os.51795.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380	Os.12628.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02390	OsAffx.4696.1.S1_at	11/11	6	+	818374..819357	ADP-ribosylation factor 1, putative
LOC_Os06g02400	Os.44826.1.S1_at	5/11	6	+	824557..828064	F-box domain containing protein
LOC_Os06g02410	OsAffx.30517.2.A1_at	11/11	6	+	827718..829762	expressed protein
LOC_Os06g02410	Os.4509.1.S1_x_at	10/11	6	+	827718..829762	expressed protein
LOC_Os06g02420	Os.4510.1.S1_at	6/11	6	+	831842..833940	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430	Os.15602.1.S1_x_at	11/11	6	+	834630..838033	expressed protein
LOC_Os06g02430	Os.15602.1.S1_at	10/11	6	+	834630..838033	expressed protein
LOC_Os06g02440	Os.4513.1.S1_at	11/11	6	+	840323..843186	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006457	biological_process	protein folding
GO:0008219	biological_process	cell death
GO:0009627	biological_process	systemic acquired resistance
GO:0051085	biological_process	chaperone cofactor dependent protein folding
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51795.1.S1_at--233--91	1	Chr06:815431..815455 (25 bp)	AGGTCAGGTGAGCTCAAACCCTATC	LOC_Os06g02380
Os.51795.1.S1_at--31--413	1	Chr06:815311..815335 (25 bp)	CGCACGATTCGGTTGCCGCGTGGTT	LOC_Os06g02380
Os.51795.1.S1_at--1085--789	1	Chr06:815283..815307 (25 bp)	GGATTCGGTGGATAGTTCTCGCCGC	LOC_Os06g02380
Os.51795.1.S1_at--161--1027	1	Chr06:815197..815221 (25 bp)	TTTGATGGTTGCTCGTGCGGGCTAA	LOC_Os06g02380
Os.51795.1.S1_at--381--911	1	Chr06:815182..815206 (25 bp)	TGCGGGCTAATTTTGCGCTAGAACT	LOC_Os06g02380
Os.51795.1.S1_at--533--73	1	Chr06:815064..815088 (25 bp)	ATGTTGTTGGCTCCAGCGTTCTGTT	LOC_Os06g02380
Os.51795.1.S1_at--369--671	1	Chr06:815042..815066 (25 bp)	GTTCGTCTGGTTGTGACTTTTGGCA	LOC_Os06g02380
Os.51795.1.S1_at--836--771	1	Chr06:815015..815039 (25 bp)	GGGTGTTCTAATTCAGCCAAGTAGA	LOC_Os06g02380
Os.51795.1.S1_at--140--615	1	Chr06:814981..815005 (25 bp)	GAGGGTGCATGCGATATTCTGTTTG	LOC_Os06g02380
Os.51795.1.S1_at--1159--1037	1	Chr06:814938..814962 (25 bp)	TTTTCATGTATGCTAGTGATGGCCA	LOC_Os06g02380
Os.51795.1.S1_at--761--441	1	Chr06:814913..814937 (25 bp)	GCCATTTGAAGCTGACGTAACTGTT	LOC_Os06g02380

Target Sequence

AGGTCAGGTGAGCTCAAACCCTATCCCCTCCTCCTCCACCTCCGCCGCTCCTCCCCGCCCCGGGGCGCTGGGTTCTCCCT
CTTCCGGTGGCGACGTGGTGGGGTGTGGTGTGTTGACCCCCGCACGATTCGGTTGCCGCGTGGTTGGAGGATTCGGTGGA
TAGTTCTCGCCGCGCGATTCGTGGGGGGCGGAGAGCTCGAGGTCGCGCCCCCCGCTTGGTTTTGAGGGGGGCCTTTTGAT
GGTTGCTCGTGCGGGCTAATTTTGCGCTAGAACTGTTATATCAGTGGAAATTGTTGGTTTAGTTAGCACGGGGACTACAG
AATGTATCAGTGGAAATTGTTGGTTTAGTTAGCACGGGGACTACAGAATGTTGTTGGCTCCAGCGTTCTGTTCGTCTGGT
TGTGACTTTTGGCATGGGGTGTTCTAATTCAGCCAAGTAGAGTGGAGTAGGAGGGTGCATGCGATATTCTGTTTGGCAGT
TGGAATGCTAGTGTTTTCATGTATGCTAGTGATGGCCAGCCATTTGAAGCTGACGTAACTGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis