Browse Element(s) Details


Os.51835.1.S1_a_at

Description gb:AK101758.1
DB_XREF= gi:32986967
TID=Os.51835.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033063M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033063M08, full insert sequence.
FL= gb:AK101758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4870011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein
LOC_Os05g48700Os.51835.1.S1_a_at11/115+27827531..27829652oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g48710OsAffx.31233.1.S1_at11/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_s_at9/115+27837449..27840474expressed protein
LOC_Os05g48710OsAffx.31233.2.S1_at1/115+27837449..27840474expressed protein
LOC_Os05g48720OsAffx.1319.1.S1_at1/115+27840877..27843589transposon protein, putative, Mariner sub-class
LOC_Os05g48730OsAffx.15155.1.S1_at11/115+27845754..27846005hypothetical protein
LOC_Os05g48740NANA5+27852177..27852404expressed protein
LOC_Os05g48750OsAffx.4655.1.S1_x_at11/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed
LOC_Os05g48750Os.7761.1.S1_at10/115+27852857..278560713-deoxy-D-manno-octulosonate cytidylyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51835.1.S1_a_at--441--6451Chr05:27827953..27827977 (25 bp)
GATCAACCCGACGACTGTGAACAAC
LOC_Os05g48700
Os.51835.1.S1_a_at--394--2031Chr05:27827912..27827936 (25 bp)
ACTAGTGTAGTTAGCTCCGTGGTAC
LOC_Os05g48700
Os.51835.1.S1_a_at--285--3811Chr05:27827898..27827922 (25 bp)
CTCCGTGGTACTGGTAGCTGTGAAT
LOC_Os05g48700
Os.51835.1.S1_a_at--1119--4031Chr05:27827850..27827874 (25 bp)
CGATCTATCCTTGTGTTGTGTTACT
LOC_Os05g48700
Os.51835.1.S1_a_at--626--10531Chr05:27827815..27827839 (25 bp)
TTCTGGTAACTAAAGGCCGCCGTTG
LOC_Os05g48700
Os.51835.1.S1_a_at--687--1191Chr05:27827721..27827745 (25 bp)
AGTAGTGCAGCAGTACTCCTCTGTC
LOC_Os05g48700
Os.51835.1.S1_a_at--424--9051Chr05:27827667..27827691 (25 bp)
TGCAGTTCAGTGCAGCGTTGTGCAT
LOC_Os05g48700
Os.51835.1.S1_a_at--216--8811Chr05:27827643..27827667 (25 bp)
TGTTGTGTAAAATAGCTTGCCGCAT
LOC_Os05g48700
Os.51835.1.S1_a_at--590--1551Chr05:27827630..27827654 (25 bp)
AGCTTGCCGCATGCATATGTGATTA
LOC_Os05g48700
Os.51835.1.S1_a_at--901--10111Chr05:27827615..27827639 (25 bp)
TATGTGATTATGTGCTGCTCCTGTC
LOC_Os05g48700
Os.51835.1.S1_a_at--157--6951Chr05:27827572..27827596 (25 bp)
GTAGCATGGTTTTTACCGGCTGGGC
LOC_Os05g48700
Target Sequence 
GATCAACCCGACGACTGTGAACAACTGTGAAGTGTTACTGTACTAGTGTAGTTAGCTCCGTGGTACTGGTAGCTGTGAAT
ATGATCGAGATCGATCGATCGATCGATCTATCCTTGTGTTGTGTTACTTTTAACCCATTTCTGGTAACTAAAGGCCGCCG
TTGCCTTGGCTTGCTTGGCCAGCCCAAAACTGGCACTGGCGAGCTGCCTCCTCCTGCATGCCTNTGCTGTGCAGTAGTGC
AGCAGTACTCCTCTGTCCTGGGGTTTTCTGCAGCAGAGCAGTGGAGTGCAGTTCAGTGCAGCGTTGTGCATGTTGTGTAA
AATAGCTTGCCGCATGCATATGTGATTATGTGCTGCTCCTGTCGACGCTGCCGCCCCTTTTGTAGCATGGTTTTTACCGG
CTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51835.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis