Browse Element(s) Details


Os.51875.1.S1_at

Description gb:AK064147.1
DB_XREF= gi:32974165
TID=Os.51875.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C08, full insert sequence.
FL= gb:AK064147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0974010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09780Os.53513.1.S1_at11/118+5646337..5649305expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51875.1.S1_at--504--6851Chr08:5625037..5625061 (25 bp)
GTTTGCCTGTAAACGCCTTAGTACG
LOC_Os08g09740
Os.51875.1.S1_at--979--431NONE
ATCTTAGAGTCCGTATGCTGGCACA
NONE
Os.51875.1.S1_at--1122--611Chr08:5625101..5625125 (25 bp)
ATGCTGGCACAGTTGTTCAATTCTA
LOC_Os08g09740
Os.51875.1.S1_at--47--6771Chr08:5625115..5625139 (25 bp)
GTTCAATTCTAATGGCTTGTCCTTA
LOC_Os08g09740
Os.51875.1.S1_at--1046--5311Chr08:5625159..5625527 (25 bp)
GAAGTGGGAGCTTCCGCCTTCGCAA
LOC_Os08g09740
Os.51875.1.S1_at--1087--8711Chr08:5625566..5625590 (25 bp)
TGTCGTGACTGGTCGCTGTGAAACC
LOC_Os08g09740
Os.51875.1.S1_at--1132--8271Chr08:5625674..5625698 (25 bp)
GGCTTTTGATATACCCCTTCAGAAT
LOC_Os08g09740
Os.51875.1.S1_at--499--8691Chr08:5625736..5625760 (25 bp)
TGTCCAGTTGAAGCCACTGTCATCT
LOC_Os08g09740
Os.51875.1.S1_at--524--7131Chr08:5625754..5625778 (25 bp)
GTCATCTTAGTTTACCTTGCTACCA
LOC_Os08g09740
Os.51875.1.S1_at--922--5031Chr08:5625803..5625827 (25 bp)
GCAGACGTCGTGTGCTACGGTTTAA
LOC_Os08g09740
Os.51875.1.S1_at--528--7591Chr08:5625840..5625864 (25 bp)
GGGCATATTGTTCTAAACTCGTTAC
LOC_Os08g09740
Target Sequence 
GTTTGCCTGTAAACGCCTTAGTACGGTGAAGATCAGATGCACCAAGGATGATCTTAGAGTCCGTATGCTGGCACAGTTGT
TCAATTCTAATGGCTTGTCCTTAGAGAAGATTTTCGTCCGTCGAAGTGGGAGCTTCCGCCTTCGCAACTCCAAACTTAAC
AGAGAATTAAATTGCCCGTGGCGGATGTCGTGACTGGTCGCTGTGAAACCCAGACCTTCAAAATATTCAAGATCGATGCT
CTAAGGATGATGTAAGAGACTCAATAATCCATATGCTGGCGAAAATTGTTCAGGGCTTTTGATATACCCCTTCAGAATAT
TTACCATTCATGTCCATTTGAATTGGAGTTATTCATGTCCAGTTGAAGCCACTGTCATCTTAGTTTACCTTGCTACCAGT
ATAGTTCGAATTTACAGTTACAGCAGACGTCGTGTGCTACGGTTTAAAGCAAATGTTCTGGGCATATTGTTCTAAACTCG
TTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis