Browse Element(s) Details


OsAffx.29123.1.S1_at

Description tigr:9636.m00926
TID=OsAffx.29123.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0972011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29123.1.S1_at--485--6191Chr08:5614516..5614540 (25 bp)
GAGGCAACTGGAAAATTGCCCCATT
LOC_Os08g09720
OsAffx.29123.1.S1_at--514--931Chr08:5614517..5614541 (25 bp)
AGGCAACTGGAAAATTGCCCCATTT
LOC_Os08g09720
OsAffx.29123.1.S1_at--130--10671Chr08:5614531..5614555 (25 bp)
TTGCCCCATTTTCAATAACCTGAAC
LOC_Os08g09720
OsAffx.29123.1.S1_at--376--4511Chr08:5614533..5614557 (25 bp)
GCCCCATTTTCAATAACCTGAACAC
LOC_Os08g09720
OsAffx.29123.1.S1_at--516--9691Chr08:5614542..5614566 (25 bp)
TCAATAACCTGAACACTCTAACCCT
LOC_Os08g09720
OsAffx.29123.1.S1_at--1118--3071Chr08:5614544..5614568 (25 bp)
AATAACCTGAACACTCTAACCCTTG
LOC_Os08g09720
OsAffx.29123.1.S1_at--207--331Chr08:5614545..5614569 (25 bp)
ATAACCTGAACACTCTAACCCTTGG
LOC_Os08g09720
OsAffx.29123.1.S1_at--88--9811Chr08:5614546..5614570 (25 bp)
TAACCTGAACACTCTAACCCTTGGT
LOC_Os08g09720
OsAffx.29123.1.S1_at--355--2611Chr08:5614547..5614571 (25 bp)
AACCTGAACACTCTAACCCTTGGTG
LOC_Os08g09720
OsAffx.29123.1.S1_at--419--1771Chr08:5614548..5614572 (25 bp)
ACCTGAACACTCTAACCCTTGGTGA
LOC_Os08g09720
OsAffx.29123.1.S1_at--565--3851Chr08:5614550..5614574 (25 bp)
CTGAACACTCTAACCCTTGGTGAAT
LOC_Os08g09720
Target Sequence 
GAGGCAACTGGAAAATTGCCCCATTTTCAATAACCTGAACACTCTAACCCTTGGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis