Browse Element(s) Details


Os.54840.1.S1_at

Description gb:AK106882.1
DB_XREF= gi:32992091
TID=Os.54840.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F04, full insert sequence.
FL= gb:AK106882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0973011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54840.1.S1_at--307--7071Chr08:5619909..5619933 (25 bp)
GTAATGGTCCATAAGCTGGCGGAAT
LOC_Os08g09730
Os.54840.1.S1_at--364--4711Chr08:5619923..5619947 (25 bp)
GCTGGCGGAATTCCTCGAAGCTAAC
LOC_Os08g09730
Os.54840.1.S1_at--1059--5371Chr08:5619939..5619963 (25 bp)
GAAGCTAACGGCCTACAGCGTCAGA
LOC_Os08g09730
Os.54840.1.S1_at--823--3371Chr08:5619954..5619978 (25 bp)
CAGCGTCAGAGGATTTTTGTTCGTC
LOC_Os08g09730
Os.54840.1.S1_at--404--7231Chr08:5619976..5620000 (25 bp)
GTCGCACATCCAGAACTCGTAGAGA
LOC_Os08g09730
Os.54840.1.S1_at--1095--5451Chr08:5619988..5620012 (25 bp)
GAACTCGTAGAGACTCCAGGGCGAA
LOC_Os08g09730
Os.54840.1.S1_at--105--8891Chr08:5620036..5620060 (25 bp)
TGAGGCTCGCAAAGAAGTGGTGAAC
LOC_Os08g09730
Os.54840.1.S1_at--914--7751Chr08:5620095..5620119 (25 bp)
GGTGCCTAAAATGCCGAAAGCCGGT
LOC_Os08g09730
Os.54840.1.S1_at--293--3711Chr08:5620165..5620189 (25 bp)
CTAGGATTGTCTACTGGATGTGTAT
LOC_Os08g09730
Os.54840.1.S1_at--944--9031Chr08:5620191..5620215 (25 bp)
TGCATCAGTTTTAGTACAGGTACCT
LOC_Os08g09730
Os.54840.1.S1_at--315--7851Chr08:5620209..5620233 (25 bp)
GGTACCTGGGTATGTGCAAGACTTT
LOC_Os08g09730
Target Sequence 
GTAATGGTCCATAAGCTGGCGGAATTCCTCGAAGCTAACGGCCTACAGCGTCAGAGGATTTTTGTTCGTCGCACATCCAG
AACTCGTAGAGACTCCAGGGCGAAACAGAAAGAGCAAGAGGATCATTTGAGGCTCGCAAAGAAGTGGTGAACGGTGTGAA
ATAGTAGAAGCCTGGAGTGAGGGAAAGGTGCCTAAAATGCCGAAAGCCGGTGCGGGCGTTGAGGAATCCAGTGCTGAGTT
TACATTGCAGTTAACACTAGGATTGTCTACTGGATGTGTATATGCATCAGTTTTAGTACAGGTACCTGGGTATGTGCAAG
ACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis