Browse Element(s) Details


Os.5188.2.S1_s_at

Description gb:AK068722.1
DB_XREF= gi:32978739
TID=Os.5188.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013165B12, full insert sequence.
FL= gb:AK068722.1 gb:AK104226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g234104/11Rubredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23380OsAffx.29315.1.S1_at4/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23380OsAffx.3810.1.S1_at3/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23390Os.23638.1.A1_x_at1/118+14008162..14009966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23400OsAffx.22947.1.S1_x_at1/118+14010252..14014703retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23410Os.5188.2.S1_x_at11/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23410Os.5188.2.S1_s_at4/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23420OsAffx.5903.1.S1_at10/118+14031879..14033448hypothetical protein
LOC_Os08g23430Os.15099.1.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23430Os.15099.2.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5188.2.S1_s_at--383--9291Chr08:14025364..14025388 (25 bp)
TCCCCGACGACTGGCGGTGCCCGAC
LOC_Os08g23410
Os.5188.2.S1_s_at--392--3731Chr08:14025099..14025123 (25 bp)
CTAATTAAGTATATATCAGTACGTT
LOC_Os08g23410
Os.5188.2.S1_s_at--85--131Chr08:14025050..14025074 (25 bp)
ATTAATCTGTGTGAATACATAGTGC
LOC_Os08g23410
Os.5188.2.S1_s_at--226--491Chr08:14025046..14025070 (25 bp)
ATCTGTGTGAATACATAGTGCTATT
LOC_Os08g23410
Os.5188.2.S1_s_at--726--3091Chr08:14025037..14025061 (25 bp)
AATACATAGTGCTATTCCATCTCGA
NONE
Os.5188.2.S1_s_at--902--9871Chr08:14025035..14025059 (25 bp)
TACATAGTGCTATTCCATCTCGAAT
NONE
Os.5188.2.S1_s_at--563--3571Chr08:14025033..14025057 (25 bp)
CATAGTGCTATTCCATCTCGAATTT
NONE
Os.5188.2.S1_s_at--410--10071Chr08:14025031..14025055 (25 bp)
TAGTGCTATTCCATCTCGAATTTTG
NONE
Os.5188.2.S1_s_at--512--1131Chr08:14025030..14025054 (25 bp)
AGTGCTATTCCATCTCGAATTTTGA
NONE
Os.5188.2.S1_s_at--289--7331Chr08:14025029..14025053 (25 bp)
GTGCTATTCCATCTCGAATTTTGAA
NONE
Os.5188.2.S1_s_at--999--4871Chr08:14025027..14025051 (25 bp)
GCTATTCCATCTCGAATTTTGAATT
NONE
Target Sequence 
TCCCCGACGACTGGCGGTGCCCGACGTGCGGCGCGGCGCAGTCCTTCTTCGAGAGCAAGAGCGTCGAGATCGCCGGGTTC
GCGCAGAACCAGCAGTTCGGCCTCGGCGGCAACTCCCTCACCGGCGACCAGAAAGCGCTGCTCATCTACGGCAGCCTCCT
CGTCGGCTTCCTCTTCTTCCTCTCCGGCTACTTCCTCCAATGAACCAGTCACCCCCTCTTCCTAATTCTCTACCTCTACC
TCTACCTCTACTGTGCCTGTTTCTACTAATTAAGTATATATCAGTACGTTTTATTTTTATTGGCTAATTAATTAATTAAT
CTGTGTGAATACATAGTGCTATTCCATCTCGAATTTTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5188.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis