Browse Element(s) Details


OsAffx.5903.1.S1_at

Description tigr:9636.m02280
TID=OsAffx.5903.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2342010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23390Os.23638.1.A1_x_at1/118+14008162..14009966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23400OsAffx.22947.1.S1_x_at1/118+14010252..14014703retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23410Os.5188.2.S1_x_at11/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23410Os.5188.2.S1_s_at4/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23420OsAffx.5903.1.S1_at10/118+14031879..14033448hypothetical protein
LOC_Os08g23430Os.15099.1.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23430Os.15099.2.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5903.1.S1_at--1115--4331Chr08:14031919..14031943 (25 bp)
CCATGGTGGCGCGACGTTTGGACCA
LOC_Os08g23420
OsAffx.5903.1.S1_at--1005--5731Chr08:14031931..14031955 (25 bp)
GACGTTTGGACCAGGCCACACTAGG
LOC_Os08g23420
OsAffx.5903.1.S1_at--560--3491Chr08:14031942..14031966 (25 bp)
CAGGCCACACTAGGCGTCGTGATGA
LOC_Os08g23420
OsAffx.5903.1.S1_at--218--3711Chr08:14031951..14031975 (25 bp)
CTAGGCGTCGTGATGATACCGTGCA
LOC_Os08g23420
OsAffx.5903.1.S1_at--197--8871Chr08:14031961..14031985 (25 bp)
TGATGATACCGTGCACGGCGCTGCT
LOC_Os08g23420
OsAffx.5903.1.S1_at--183--4731Chr08:14032049..14032073 (25 bp)
GCTGGTCGACGCGTACCTCGTTGAG
LOC_Os08g23420
OsAffx.5903.1.S1_at--290--5791Chr08:14032056..14032080 (25 bp)
GACGCGTACCTCGTTGAGTCGGCGC
LOC_Os08g23420
OsAffx.5903.1.S1_at--731--9131Chr08:14032093..14032117 (25 bp)
TGCGGCCCGCTGAGTTCGAGGAGAG
LOC_Os08g23420
OsAffx.5903.1.S1_at--154--4251Chr08:14032829..14032849 (21 bp)
CCGTCTGATGGCCTGAAATGCTATG
LOC_Os08g23420
OsAffx.5903.1.S1_at--635--9831Chr08:14032880..14032900 (21 bp)
TAAAGGGCTCAATTGTGCAGGATGC
LOC_Os08g23420
OsAffx.5903.1.S1_at--313--7591NONE
GGGCTCAATTGTGCAGGATGCCTCG
NONE
Target Sequence 
CCATGGTGGCGCGACGTTTGGACCAGGCCACACTAGGCGTCGTGATGATACCGTGCACGGCGCTGCTCGACGTGCCGCTG
GTGATGTGCCTGGTGCGCGGCTTCCTCAAGGACGCCACAAGGATGGCGAGGCTGGTCGACGCGTACCTCGTTGAGTCGGC
GCTCGAGGCCAGGCTGCGGCCCGCTGAGTTCGAGGAGAGCTCACCCGCGCCGTCTGATGGCCTGAAATGCTATGATCTTG
TTGAAGGGAAGGGTCCAACTGCTGTAAAGGGCTCAATTGTGCAGGATGCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis