Browse Element(s) Details


Os.15099.2.S1_at

Description gb:AK121043.1
DB_XREF= gi:37990666
TID=Os.15099.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052N16, full insert sequence.
FL= gb:AK121043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2343011/11glycoside hydrolase starch-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23390Os.23638.1.A1_x_at1/118+14008162..14009966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23400OsAffx.22947.1.S1_x_at1/118+14010252..14014703retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23410Os.5188.2.S1_x_at11/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23410Os.5188.2.S1_s_at4/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23420OsAffx.5903.1.S1_at10/118+14031879..14033448hypothetical protein
LOC_Os08g23430Os.15099.1.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23430Os.15099.2.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23450OsAffx.17114.1.S1_at11/118+14063498..14067466hypothetical protein
LOC_Os08g23450OsAffx.12420.1.S1_at1/118+14063498..14067466hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15099.2.S1_at--645--2831Chr08:14038848..14038872 (25 bp)
AAGTATGTCCCATGTTCTGTTTCGT
LOC_Os08g23430
Os.15099.2.S1_at--1066--5251Chr08:14038772..14038796 (25 bp)
GAATCCAATCCACCTTTTATTTTGA
LOC_Os08g23430
Os.15099.2.S1_at--524--7151Chr08:14038734..14038758 (25 bp)
GTCTTACTCATTTACCTTTCAGCTG
LOC_Os08g23430
Os.15099.2.S1_at--786--1291Chr08:14038689..14038713 (25 bp)
AGATGCACTTGGCAGTACTTCTATT
LOC_Os08g23430
Os.15099.2.S1_at--1064--1171Chr08:14038676..14038700 (25 bp)
AGTACTTCTATTTGTCTTTCACCAA
LOC_Os08g23430
Os.15099.2.S1_at--496--7551Chr08:14038585..14038609 (25 bp)
GGGCCATCAGTTCACGCACAGATTC
LOC_Os08g23430
Os.15099.2.S1_at--992--4771Chr08:14038556..14038580 (25 bp)
GCTGCGTAGCAGCTTTCTAGGTGTA
LOC_Os08g23430
Os.15099.2.S1_at--728--6491Chr08:14038519..14038543 (25 bp)
GATAGCTCCTTAACATCTGATACAA
LOC_Os08g23430
Os.15099.2.S1_at--235--2831Chr08:14038445..14038469 (25 bp)
AAGTTATAGCCGTCCTTTCATATGG
LOC_Os08g23430
Os.15099.2.S1_at--199--7591Chr08:14038422..14038446 (25 bp)
GGGCTTCAGCATATCCATTATGGAT
LOC_Os08g23430
Os.15099.2.S1_at--494--1211Chr08:14038378..14038402 (25 bp)
AGTTATCTCATCTCCTGTTCTATAT
LOC_Os08g23430
Target Sequence 
AAGTATGTCCCATGTTCTGTTTCGTACTGGAAAGTAGTATATTTGCTTTCAAACCTTATTTTTCTTTACTTATCTAGAAT
CCAATCCACCTTTTATTTTGACGTTTTACTGTATGTCTTACTCATTTACCTTTCAGCTGACTATGCTTTAATTCCTAAGA
GATGCACTTGGCAGTACTTCTATTTGTCTTTCACCAAAAGTCTACCAGAAAAAAAAAAGAAAAAAAAAACATGTATAGTA
TCTAGAACGACAAGCTGCTATGTGGGGCCATCAGTTCACGCACAGATTCTGAAGCTGCGTAGCAGCTTTCTAGGTGTAAG
CAGTTAGTGAGATAGCTCCTTAACATCTGATACAACAATTTATGATTAAGTTCTTTTCACTTGAACATTTGATTTGTTAG
GCTAAAGTTATAGCCGTCCTTTCATATGGGCTTCAGCATATCCATTATGGATTAAGAAAGGAATAGACGCTAGTTATCTC
ATCTCCTGTTCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15099.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis