Browse Element(s) Details


OsAffx.17114.1.S1_at

Description tigr:9636.m02287
TID=OsAffx.17114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2345011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23430Os.15099.1.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23430Os.15099.2.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23450OsAffx.17114.1.S1_at11/118+14063498..14067466hypothetical protein
LOC_Os08g23450OsAffx.12420.1.S1_at1/118+14063498..14067466hypothetical protein
LOC_Os08g23460Os.55312.1.S1_at11/118+14075038..14075933Harpin-induced protein 1 containing protein, expressed
LOC_Os08g23470Os.52623.1.S1_at11/118+14077130..14080475B3 DNA binding domain containing protein, expressed
LOC_Os08g23480OsAffx.9975.1.S1_at5/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23480OsAffx.19542.3.S1_x_at2/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23490NANA8+14089982..14092042retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17114.1.S1_at--684--2331Chr08:14064185..14064209 (25 bp)
AAAGACAAGGTTGCCTCTGAGCAAA
LOC_Os08g23450
OsAffx.17114.1.S1_at--84--2571Chr08:14064162..14064186 (25 bp)
AACTGATGCCGTGATCATGCCAAGC
LOC_Os08g23450
OsAffx.17114.1.S1_at--768--7551Chr08:14064020..14064130 (25 bp)
GGGCGGGCTCTATCAAAGACGACAT
LOC_Os08g23450
OsAffx.17114.1.S1_at--342--2771Chr08:14064005..14064029 (25 bp)
AAGACGACATCGTTCTCACTCGCTT
LOC_Os08g23450
OsAffx.17114.1.S1_at--234--6191Chr08:14063941..14063965 (25 bp)
GAGGAAACTCCTGAAGCGGCACAAA
LOC_Os08g23450
OsAffx.17114.1.S1_at--597--5691Chr08:14063816..14063840 (25 bp)
GACTTCCGCTCAAAGCGTAGGTCGT
LOC_Os08g23450
OsAffx.17114.1.S1_at--232--851Chr08:14063676..14063700 (25 bp)
AGGCATGCTGCCTACTCGAAATGGG
LOC_Os08g23450
OsAffx.17114.1.S1_at--421--2071Chr08:14063621..14063645 (25 bp)
ACTTGGGAAAGTCGCTTCGTCCTCG
LOC_Os08g23450
OsAffx.17114.1.S1_at--911--9251Chr08:14063602..14063626 (25 bp)
TCCTCGGATGGGTGCGTCGTGCAAT
LOC_Os08g23450
OsAffx.17114.1.S1_at--1110--3951Chr08:14063562..14063586 (25 bp)
CGGAGGCACGCGAGGACCTTCAGAA
LOC_Os08g23450
OsAffx.17114.1.S1_at--105--6331Chr08:14063537..14063561 (25 bp)
GATGAAGGACCTTGTCGCAGGCCAC
LOC_Os08g23450
Target Sequence 
AAAGACAAGGTTGCCTCTGAGCAAACTGATGCCGTGATCATGCCAAGCGGCAGTGGCGCCAAGGTGCCTAAGAGGAAATG
GGCGGGCTCTATCAAAGACGACATCGTTCTCACTCGCTTTCTTCTCCAAGCCGCCATCGGAGCTCCCCCAGCACCGCGGA
GGAAACTCCTGAAGCGGCACAAACCAAACATTTCTCCCGCGACTTCCGCTCAAAGCGTAGGTCGTGTGGACACCAGTTTG
TCCCCACCGGCCGTTGTCGTGACCACGCGAACTCTGCCCGCTCCTTCTCCTCCTTCACTGCCTGCCATCTCGTCTGTGCC
CGGAGCCGACAAGTTGGCCGAGGCATGCTGCCTACTCGAAATGGGCACCCGCGAGATGCTCGCCAGGATCGAGCGACTTG
GGAAAGTCGCTTCGTCCTCGGATGGGTGCGTCGTGCAATTGGAGAGCCAGCTCGCGGAGGCACGCGAGGACCTTCAGAAG
ATGAAGGACCTTGTCGCAGGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis