Browse Element(s) Details


Os.55312.1.S1_at

Description gb:AK107845.1
DB_XREF= gi:32993054
TID=Os.55312.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A02, full insert sequence.
FL= gb:AK107845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2346011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23450OsAffx.17114.1.S1_at11/118+14063498..14067466hypothetical protein
LOC_Os08g23450OsAffx.12420.1.S1_at1/118+14063498..14067466hypothetical protein
LOC_Os08g23460Os.55312.1.S1_at11/118+14075038..14075933Harpin-induced protein 1 containing protein, expressed
LOC_Os08g23470Os.52623.1.S1_at11/118+14077130..14080475B3 DNA binding domain containing protein, expressed
LOC_Os08g23480OsAffx.9975.1.S1_at5/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23480OsAffx.19542.3.S1_x_at2/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23490NANA8+14089982..14092042retrotransposon protein, putative, unclassified
LOC_Os08g23500NANA8+14092677..14093117transposon protein, putative, unclassified
LOC_Os08g23510NANA8+14100569..14104965retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0009863biological_processsalicylic acid mediated signaling pathway
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55312.1.S1_at--319--8471Chr08:14075366..14075390 (25 bp)
TGGCGCGGTTCGACGTGAGCTCCTC
LOC_Os08g23460
Os.55312.1.S1_at--458--1751Chr08:14075393..14075417 (25 bp)
ACCTCACCGTGTACGCCAAGCTGGT
LOC_Os08g23460
Os.55312.1.S1_at--362--4691Chr08:14075431..14075455 (25 bp)
GCGGAGAACCCCAACGACATGGTCG
LOC_Os08g23460
Os.55312.1.S1_at--842--4371Chr08:14075441..14075465 (25 bp)
CCAACGACATGGTCGGGATCGGCTA
LOC_Os08g23460
Os.55312.1.S1_at--377--9371Chr08:14075741..14075765 (25 bp)
TCGACGGCCTCTCGCCCAAGAAGAA
LOC_Os08g23460
Os.55312.1.S1_at--323--5411Chr08:14075763..14075787 (25 bp)
GAAGCCCGCTATCAAGTCCGCCGAA
LOC_Os08g23460
Os.55312.1.S1_at--873--7231Chr08:14075778..14075802 (25 bp)
GTCCGCCGAATACAGGGTCAACGTA
LOC_Os08g23460
Os.55312.1.S1_at--287--2551Chr08:14075797..14075821 (25 bp)
AACGTAGAGTTTTAATTCATCAGGA
LOC_Os08g23460
Os.55312.1.S1_at--295--2291Chr08:14075837..14075861 (25 bp)
AAATGACCATGATTACTTGTCTAAT
LOC_Os08g23460
Os.55312.1.S1_at--1097--10411Chr08:14075849..14075873 (25 bp)
TTACTTGTCTAATCGAATTTCTTAA
LOC_Os08g23460
Os.55312.1.S1_at--1081--5211Chr08:14075863..14075887 (25 bp)
GAATTTCTTAATGTAGCTATAGCTT
LOC_Os08g23460
Target Sequence 
TGGCGCGGTTCGACGTGAGCTCCTCCGACCTCACCGTGTACGCCAAGCTGGTGGCGTCCGTCCGCGCGGAGAACCCCAAC
GACATGGTCGGGATCGGCTACGGCGCCGGGTCGCGGGCGGCGGTGTCGTACCGCGGCACGACGCTGTGCTCGGGGCGGCT
GCCGGCGTTCTACCAGGGCCACCGGAACACGACGGTGGTGAGGGTGGCCATGGAGGGGCGGCACGGCTTCGGGCCGGGGC
TGCAGGGCGCGCTGGAGGAGAGCGAGGAGGCCGACAACGTGCCGCTCGACGTGTACGTCAGCGCGCCGGTGACGCTCCGG
CTGGGCGACGTCGACCTCCGGGAGGTGACGGTCAACGTGCACTGCGCGCTCGTCGTCGACGGCCTCTCGCCCAAGAAGAA
GCCCGCTATCAAGTCCGCCGAATACAGGGTCAACGTAGAGTTTTAATTCATCAGGAATTCAGGATGTATTGAAATGACCA
TGATTACTTGTCTAATCGAATTTCTTAATGTAGCTATAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis