Browse Element(s) Details


Os.52623.1.S1_at

Description gb:AK068359.1
DB_XREF= gi:32978377
TID=Os.52623.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146O10, full insert sequence.
FL= gb:AK068359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2347011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23450OsAffx.17114.1.S1_at11/118+14063498..14067466hypothetical protein
LOC_Os08g23450OsAffx.12420.1.S1_at1/118+14063498..14067466hypothetical protein
LOC_Os08g23460Os.55312.1.S1_at11/118+14075038..14075933Harpin-induced protein 1 containing protein, expressed
LOC_Os08g23470Os.52623.1.S1_at11/118+14077130..14080475B3 DNA binding domain containing protein, expressed
LOC_Os08g23480OsAffx.9975.1.S1_at5/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23480OsAffx.19542.3.S1_x_at2/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23490NANA8+14089982..14092042retrotransposon protein, putative, unclassified
LOC_Os08g23500NANA8+14092677..14093117transposon protein, putative, unclassified
LOC_Os08g23510NANA8+14100569..14104965retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52623.1.S1_at--617--5231Chr08:14077630..14078042 (25 bp)
GAATATCCTCTCTAAGTATCGCCAA
LOC_Os08g23470
Os.52623.1.S1_at--11--1431Chr08:14077576..14077600 (25 bp)
AGAAAACTATCCGTCTTTCGCGTCT
LOC_Os08g23470
Os.52623.1.S1_at--915--8131Chr08:14077548..14077572 (25 bp)
GGACAAGTGGAACATCAGGCTTTCT
LOC_Os08g23470
Os.52623.1.S1_at--268--3491Chr08:14077533..14077557 (25 bp)
CAGGCTTTCTGATTCGAGTGGTAAC
LOC_Os08g23470
Os.52623.1.S1_at--644--251Chr08:14077450..14077474 (25 bp)
ATATCTGCCTGTTCGAGCTGTTGAA
LOC_Os08g23470
Os.52623.1.S1_at--278--5571Chr08:14077407..14077431 (25 bp)
GAAAGTTCATATCATCAGGGCAAAG
LOC_Os08g23470
Os.52623.1.S1_at--924--1671Chr08:14077364..14077388 (25 bp)
AGCCTGTTGAATCTGCTGATTTCTC
LOC_Os08g23470
Os.52623.1.S1_at--244--10591Chr08:14077344..14077368 (25 bp)
TTCTCTGATGACTGTTGCTGGTGCT
LOC_Os08g23470
Os.52623.1.S1_at--869--7851Chr08:14077302..14077326 (25 bp)
GGTAGTCTATCCACAGTTTATGCAA
LOC_Os08g23470
Os.52623.1.S1_at--254--1311Chr08:14077231..14077255 (25 bp)
AGATGGTGATTTCCCTTGCTAATTC
LOC_Os08g23470
Os.52623.1.S1_at--815--6691Chr08:14077179..14077203 (25 bp)
GTTCCCTTGCTAATTAATGACCCAT
LOC_Os08g23470
Target Sequence 
GAATATCCTCTCTAAGTATCGCCAACCGATATGTTGATAATTACCTTCAAGACGAGAAAACTATCCGTCTTTCGCGTCTT
GGGGACAAGTGGAACATCAGGCTTTCTGATTCGAGTGGTAACAGAAGGATGGTTGGTGGATGCCGAAAGTTTGCGGAAGA
CAATGATGTTGGAGTGGGTGATATCTGCCTGTTCGAGCTGTTGAAGAATCATAAATGCACAATGAAAGTTCATATCATCA
GGGCAAAGGATATCTGTTAATCGAAAAGCCTGTTGAATCTGCTGATTTCTCTGATGACTGTTGCTGGTGCTTTTGTGCTG
CTGAGAATGGTAGTCTATCCACAGTTTATGCAACTACTGGTACTAAGTTGTTATTGAACTAGTACATTGCATGCTGATTA
GATGGTGATTTCCCTTGCTAATTCTCTTTTTTTGGGTGATACACTAGGGGGGTTCCCTTGCTAATTAATGACCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis