Browse Element(s) Details


Os.55571.1.S1_at

Description gb:AK108337.1
DB_XREF= gi:32993546
TID=Os.55571.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-A07, full insert sequence.
FL= gb:AK108337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2344011/11cation-chloride cotransporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23420OsAffx.5903.1.S1_at10/118+14031879..14033448hypothetical protein
LOC_Os08g23430Os.15099.1.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23430Os.15099.2.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23440Os.55571.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23440Os.6062.1.S1_at11/118+14053325..14062577cation-chloride cotransporter, putative, expressed
LOC_Os08g23450OsAffx.17114.1.S1_at11/118+14063498..14067466hypothetical protein
LOC_Os08g23450OsAffx.12420.1.S1_at1/118+14063498..14067466hypothetical protein
LOC_Os08g23460Os.55312.1.S1_at11/118+14075038..14075933Harpin-induced protein 1 containing protein, expressed
LOC_Os08g23470Os.52623.1.S1_at11/118+14077130..14080475B3 DNA binding domain containing protein, expressed
LOC_Os08g23480OsAffx.9975.1.S1_at5/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g23480OsAffx.19542.3.S1_x_at2/118+14081554..14087491retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0015377molecular_functioncation:chloride symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55571.1.S1_at--425--5711Chr08:14062365..14062389 (25 bp)
GACTACAGACCATGGCTTCGTTCTC
LOC_Os08g23440
Os.55571.1.S1_at--332--7391Chr08:14062307..14062331 (25 bp)
GTGAGCACATGCTACAATCCCTAGT
LOC_Os08g23440
Os.55571.1.S1_at--267--8671Chr08:14062253..14062277 (25 bp)
TGTGGATCTGGATCACGCTGGCCGT
LOC_Os08g23440
Os.55571.1.S1_at--378--9511Chr08:14062217..14062241 (25 bp)
TCTCTTTGCAGGAGGTGGCGCTAAA
LOC_Os08g23440
Os.55571.1.S1_at--41--8471Chr08:14062202..14062226 (25 bp)
TGGCGCTAAACCCTATATCTCACTG
LOC_Os08g23440
Os.55571.1.S1_at--710--451Chr08:14062186..14062210 (25 bp)
ATCTCACTGTGCGTTGTAGTTGCTA
LOC_Os08g23440
Os.55571.1.S1_at--617--4531Chr08:14061979..14062003 (25 bp)
GCCCCAGCCACCAAGGTATATGGAA
LOC_Os08g23440
Os.55571.1.S1_at--285--5391Chr08:14061957..14061981 (25 bp)
GAAGCTTCGCTTCAAATTTTGGAGA
LOC_Os08g23440
Os.55571.1.S1_at--906--5211Chr08:14061875..14061899 (25 bp)
GAATTAGTATACCATTGCTTGTGCA
LOC_Os08g23440
Os.55571.1.S1_at--785--5131Chr08:14061853..14061877 (25 bp)
GCAAATCCGATCGTGCATTGTCTTG
LOC_Os08g23440
Os.55571.1.S1_at--262--3611Chr08:14061838..14061862 (25 bp)
CATTGTCTTGCTCGTGCGTTATTAA
LOC_Os08g23440
Target Sequence 
GACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGGTGAGCACATGCTACAATCCCT
AGTCCCTTCTCTGCTGGTGTGCGTCGCGGCGGTGTGGATCTGGATCACGCTGGCCGTGGAGGGGGTTCTCTCTTTGCAGG
AGGTGGCGCTAAACCCTATATCTCACTGTGCGTTGTAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCA
GCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCAT
CCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAA
GGTATATGGAAGCTTCGCTTCAAATTTTGGAGATCGAATTTTAGCAATATTCTCTTCTAGGGGGAGTAGACTAAAACACT
TGTACTGCTTGAATTAGTATACCATTGCTTGTGCAAATCCGATCGTGCATTGTCTTGCTCGTGCGTTATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis